Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03238 ATGAAGTCAAGATTTCTTAGAGGGTGCCTTAACAAGTGCAAGAAAATGTGCCTCAACAAGTGCATATCTTGTGTGGACTGTTGTGAATGGGCTTTGTGGTCTTCTTTGCATGAAGGTTGCTCCAATATTCCAAGTGATGTTCCAAAGGGTCACTTGGTTGTGTATGTAGGAGAGAACCACAAGAGATATGTGATCAAGATTGCATTACTCCACCATCCACTCTTCAGGGCCTTGTTGGATCAAGCTCAGGAAGAGTATGATTTCATTGCTGATTCTAAACTCTGTATTCCCTGTGATGAACACCTCTTCCTTAGTGTCCTTCGATGTGCTAGCTCCTCCTCACAGAACCAACGAGTGTTTCTTTGTCTTTGA 372 0.4301 MKSRFLRGCLNKCKKMCLNKCISCVDCCEWALWSSLHEGCSNIPSDVPKGHLVVYVGENHKRYVIKIALLHHPLFRALLDQAQEEYDFIADSKLCIPCDEHLFLSVLRCASSSSQNQRVFLCL 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03238 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 106 IPR003676 GO:0009733
Pumo3g03238 123 Pfam Auxin responsive protein 39 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03238 Pumo-Chr3 59753589 59753960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03238 29 117 Calmodulin-binding Proteins AT4G34750 44.086 1.07e-22 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03238 K14488 - gmx:100812927 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03238 3 59753589 59753960 Pumo3g03238 3 59753589 59753960 ECH
Pumo5g03059 5 78758562 78758987 Pumo3g03238 3 59753589 59753960 PCT