LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g03234	ATGGCAGCAGAAGCAAATGGCAACACCAATTTCTGCATTAACAATGGGATCAGTGCTGCCGACCCGTTGAACTGGGGCGCTGCCGCGGAGGCCATGACGGGGAGCCACCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCTTCGTGAAGCTCGGCGGCGAGACCCTGACCATCTCGCAGGTGGCGGCCATCGCGGCGCACGACCAGGGGGTGAAGGTGGAGCTGGCCGAGTCCTCCAGGGCCGGCGTTAAGGCCAGCAGCGACTGGGTGATGGAGAGCATGGACAAAGGCACCGACAGCTACGGTGTCACCACCGGGTTCGGTGCCACCTCCCACCGTAGAACCAAACAAGGTGGCGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGTACCCTACCCCACACAGCAACCAGAGCAGCTATGCTAGTGAGAATCAACACACTTCTCCAAGGGTACTCAGGCATTAGGTTTGAAATTTTGGAGGCAATCACCAAGCTTCTGAACAACAACATCACACCATGCTTGCCACTTAGGGGTACAATCACAGCATCTGGTGATCTTGTTCCTTTGTCTTACATTGCTGGTTTGCTAACTGGTAGACCAAACTCCAAGGCCGTTGGACCCTCTGGGGAGATCCTGAATGCCAAGGAAGCCTTTGAATTGGCCAACATTGGTTCTGAGTTCTTTGAGTTGCAACCAAAGGAAGGCCTTGCCCTTGTGAATGGAACTGCTGTTGGTTCTGGCTTGGCTTCTATTGTGCTCTTTGAAGCAAACATCCTTGCTGTATTGTCTGAGGTTATTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAGCCTGAGTTCACTGACCATTTGACTCATAAACTAAAGCACCACCCTGGACAGATTGAAGCTGCTGCTATTATGGAACACATTTTGGAAGGAAGCTCTTACATCAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTGCAAAAGCCTAAACAAGACCGTTATGCACTTAGAACTTCACCCCAATGGCTTGGTCCTCAAATTGAAGTGATCAGATTTTCAACCAAGTCAATTGAGAGGGAGATAAACTCGGTCAATGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCCCTTCATGGTGGTAACTTCCAAGGAACCCCTATTGGAGTCTCCATGGATAACACCCGTTTGGCTATTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTATTACAACAATGGGTTGCCTTCAAATCTCACTGCCAGCAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCATATTGTTCTGAACTCCAATACTTGGCTAACCCGGTAACCAGCCATGTGCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGGTTGATTTCATCAAGGAAGACACATGAGGCTATTGAGATCCTCAAGCTCATGTCTTCCACTTTCCTCGTTGCACTTTGCCAAGCCATTGACTTGAGGCATCTGGAGGAGAATTTGAAGAACACGGTCAAGAATGTTGTGAGCCAAGTTGCCAAGAGGACTCTCACCACAGGTGTCAATGGAGAGCTTCACCCTTCAAGATTCTGTGAGAAGGACTTGCTGAAGGTTGTTGATAGGGAGTACACATTTGCCTACATTGATGACCCCTGCAGTGGCACATACCCTCTTATGCAAAAACTAAGGCAAGTGCTTGTGGACTATGCTTTGGCCAATGGGGAGAGTGAGAAAAACTTGAACACCTCAATCTTCCAAAAGATTGCAACATTTGAGGAGGAGTTGAAGGCCCTCTTGCCTAAGGAAGTGGAAGGTGCAAGACTTGCATATGAGAATGACCAATGTGCAATTCCCAACAAGATCAAGGAATGTAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTGGGGACAGCTTTGCTAACTGGTGAAAAGGTTATCTCACCAGGTGAAGAGTGTGACAAAGTGTTCACTGCCTTGTGCCAAGGGAAAATCATTGATCCACTTTTGGAATGCCTTGGAGAGTGGAATGGTGCCCCTCTTCCAATTTGTTAG	2139	0.482	MAAEANGNTNFCINNGISAADPLNWGAAAEAMTGSHLDEVKRMVEEYRRPFVKLGGETLTISQVAAIAAHDQGVKVELAESSRAGVKASSDWVMESMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTHEAIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGESEKNLNTSIFQKIATFEEELKALLPKEVEGARLAYENDQCAIPNKIKECRSYPLYKFVREELGTALLTGEKVISPGEECDKVFTALCQGKIIDPLLECLGEWNGAPLPIC	712

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pumo3g03234	712	FunFam	Phenylalanine ammonia-lyase	525	646	-	-
Pumo3g03234	712	Pfam	Aromatic amino acid lyase	59	539	IPR001106	-
Pumo3g03234	712	ProSitePatterns	Phenylalanine and histidine ammonia-lyases signature.	194	210	IPR022313	GO:0016841
Pumo3g03234	712	Gene3D	Fumarase/aspartase (Central domain)	259	707	-	-
Pumo3g03234	712	FunFam	Phenylalanine ammonia-lyase	12	258	-	-
Pumo3g03234	712	NCBIfam	phenylalanine ammonia-lyase	21	701	IPR005922	GO:0005737\|GO:0006559\|GO:0016841
Pumo3g03234	712	SUPERFAMILY	L-aspartase-like	21	712	IPR008948	GO:0003824
Pumo3g03234	712	FunFam	Phenylalanine ammonia-lyase	259	566	-	-
Pumo3g03234	712	CDD	PAL-HAL	57	522	IPR001106	-
Pumo3g03234	712	Gene3D	-	525	646	IPR023144	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g03234	Pumo-Chr3	59699905	59704139	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g03234	17	712	Monolignol Biosynthesis Gene Families	AT2G37040	84.339	0.0	1242

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g03234	K10775		-	gmx:100803857	1371.68

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo3g03234	3	59699905	59704139	Pumo3g01309	3	20761697	20762704	ECH
	Pumo3g03234	3	59699905	59704139	Pumo3g03234	3	59699905	59704139	ECH

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