Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03234 ATGGCAGCAGAAGCAAATGGCAACACCAATTTCTGCATTAACAATGGGATCAGTGCTGCCGACCCGTTGAACTGGGGCGCTGCCGCGGAGGCCATGACGGGGAGCCACCTCGACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCTTCGTGAAGCTCGGCGGCGAGACCCTGACCATCTCGCAGGTGGCGGCCATCGCGGCGCACGACCAGGGGGTGAAGGTGGAGCTGGCCGAGTCCTCCAGGGCCGGCGTTAAGGCCAGCAGCGACTGGGTGATGGAGAGCATGGACAAAGGCACCGACAGCTACGGTGTCACCACCGGGTTCGGTGCCACCTCCCACCGTAGAACCAAACAAGGTGGCGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCCAATTGTACCCTACCCCACACAGCAACCAGAGCAGCTATGCTAGTGAGAATCAACACACTTCTCCAAGGGTACTCAGGCATTAGGTTTGAAATTTTGGAGGCAATCACCAAGCTTCTGAACAACAACATCACACCATGCTTGCCACTTAGGGGTACAATCACAGCATCTGGTGATCTTGTTCCTTTGTCTTACATTGCTGGTTTGCTAACTGGTAGACCAAACTCCAAGGCCGTTGGACCCTCTGGGGAGATCCTGAATGCCAAGGAAGCCTTTGAATTGGCCAACATTGGTTCTGAGTTCTTTGAGTTGCAACCAAAGGAAGGCCTTGCCCTTGTGAATGGAACTGCTGTTGGTTCTGGCTTGGCTTCTATTGTGCTCTTTGAAGCAAACATCCTTGCTGTATTGTCTGAGGTTATTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAGCCTGAGTTCACTGACCATTTGACTCATAAACTAAAGCACCACCCTGGACAGATTGAAGCTGCTGCTATTATGGAACACATTTTGGAAGGAAGCTCTTACATCAAAGCTGCTAAGAAGTTGCATGAGATTGATCCTTTGCAAAAGCCTAAACAAGACCGTTATGCACTTAGAACTTCACCCCAATGGCTTGGTCCTCAAATTGAAGTGATCAGATTTTCAACCAAGTCAATTGAGAGGGAGATAAACTCGGTCAATGACAACCCTTTGATTGATGTGTCAAGGAACAAGGCCCTTCATGGTGGTAACTTCCAAGGAACCCCTATTGGAGTCTCCATGGATAACACCCGTTTGGCTATTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTATTACAACAATGGGTTGCCTTCAAATCTCACTGCCAGCAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCATATTGTTCTGAACTCCAATACTTGGCTAACCCGGTAACCAGCCATGTGCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGGTTGATTTCATCAAGGAAGACACATGAGGCTATTGAGATCCTCAAGCTCATGTCTTCCACTTTCCTCGTTGCACTTTGCCAAGCCATTGACTTGAGGCATCTGGAGGAGAATTTGAAGAACACGGTCAAGAATGTTGTGAGCCAAGTTGCCAAGAGGACTCTCACCACAGGTGTCAATGGAGAGCTTCACCCTTCAAGATTCTGTGAGAAGGACTTGCTGAAGGTTGTTGATAGGGAGTACACATTTGCCTACATTGATGACCCCTGCAGTGGCACATACCCTCTTATGCAAAAACTAAGGCAAGTGCTTGTGGACTATGCTTTGGCCAATGGGGAGAGTGAGAAAAACTTGAACACCTCAATCTTCCAAAAGATTGCAACATTTGAGGAGGAGTTGAAGGCCCTCTTGCCTAAGGAAGTGGAAGGTGCAAGACTTGCATATGAGAATGACCAATGTGCAATTCCCAACAAGATCAAGGAATGTAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTGGGGACAGCTTTGCTAACTGGTGAAAAGGTTATCTCACCAGGTGAAGAGTGTGACAAAGTGTTCACTGCCTTGTGCCAAGGGAAAATCATTGATCCACTTTTGGAATGCCTTGGAGAGTGGAATGGTGCCCCTCTTCCAATTTGTTAG 2139 0.482 MAAEANGNTNFCINNGISAADPLNWGAAAEAMTGSHLDEVKRMVEEYRRPFVKLGGETLTISQVAAIAAHDQGVKVELAESSRAGVKASSDWVMESMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFELANIGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILEGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTHEAIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGESEKNLNTSIFQKIATFEEELKALLPKEVEGARLAYENDQCAIPNKIKECRSYPLYKFVREELGTALLTGEKVISPGEECDKVFTALCQGKIIDPLLECLGEWNGAPLPIC 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03234 712 FunFam Phenylalanine ammonia-lyase 525 646 - -
Pumo3g03234 712 Pfam Aromatic amino acid lyase 59 539 IPR001106 -
Pumo3g03234 712 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
Pumo3g03234 712 Gene3D Fumarase/aspartase (Central domain) 259 707 - -
Pumo3g03234 712 FunFam Phenylalanine ammonia-lyase 12 258 - -
Pumo3g03234 712 NCBIfam phenylalanine ammonia-lyase 21 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Pumo3g03234 712 SUPERFAMILY L-aspartase-like 21 712 IPR008948 GO:0003824
Pumo3g03234 712 FunFam Phenylalanine ammonia-lyase 259 566 - -
Pumo3g03234 712 CDD PAL-HAL 57 522 IPR001106 -
Pumo3g03234 712 Gene3D - 525 646 IPR023144 -
Pumo3g03234 712 Gene3D - 12 258 IPR024083 -
Pumo3g03234 712 PANTHER HISTIDINE AMMONIA-LYASE 15 712 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03234 Pumo-Chr3 59699905 59704139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03234 17 712 Monolignol Biosynthesis Gene Families AT2G37040 84.339 0.0 1242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03234 K10775 - gmx:100803857 1371.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03234 3 59699905 59704139 Pumo3g01309 3 20761697 20762704 ECH
Pumo3g03234 3 59699905 59704139 Pumo3g03234 3 59699905 59704139 ECH