Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03232 ATGTCTACCTCCGCAGCTTCTCTCGCACTCCCAACTCTCACTCTCCGAACCCGACAACCTCTGTGCTCTCCCCAGTGCTTCTCTTCCCTCTCTCTCACCCCTAATTCCAAACCCATTTCCATTTCCGCTGTTTTCCTCAAACCAACGTTGTCGTTGTCGTCTCGGTTTGTTCCACGCGTCGCGGTTTCGTCGGAGTTGGAGCAGGAGGAGGACACCTTCAGCGACGGAGACAGCCCCAGTTTCTCCCCTGACCTTAAACTCTTTGTCGGGAACCTTCCGTTCAGTGTCGACAGCGCGCAGCTCGCTGAGCTTTTTGAGAGTGCGGGGAATGTGGAGGTGGTTGAGGTGATTTATGATAAGACTACTGGGAGGAGCAGGGGGTTTGGGTTTGTGACCATGTCTTCGGCTGAGGAGGCTGAAGCGGCTGCTCAGCAGTTCAATGGCTATGAACTGGATGGAAGAGCATTGAGAGTGAATTCTGGGCCACCTCCTGCTCGGAATGAGAGTGCTCCTCGTTTTAGAGGTGGTTTTTCCGGTTCCAGAGGTGGTGGTCCTTCAGATAGTGAAAACCGTGTTCATGTAGGTAATCTTGCTTGGGGTGTTGACAATGTAGCACTTGAGTCATTGTTTCGAGAACAAGGAAAGGTCTTGGAAGCTAGGGTAATCTATGACAGGGAAAGTGGCCGATCAAGAGGCTTTGGATTTGTGACATACAGTAGCCCTGAAGAGGTCAACGGTGCAATTCAGTCCTTAGACGGTGTGGACTTGAATGGCAGAGCTATACGAGTCTCAGTAGCAGATTCCAAGCCCAAGCGGTTTTGA 822 0.517 MSTSAASLALPTLTLRTRQPLCSPQCFSSLSLTPNSKPISISAVFLKPTLSLSSRFVPRVAVSSELEQEEDTFSDGDSPSFSPDLKLFVGNLPFSVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSAEEAEAAAQQFNGYELDGRALRVNSGPPPARNESAPRFRGGFSGSRGGGPSDSENRVHVGNLAWGVDNVALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPEEVNGAIQSLDGVDLNGRAIRVSVADSKPKRF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03232 273 SUPERFAMILY RNA-binding domain, RBD 186 272 IPR035979 GO:0003676
Pumo3g03232 273 MobiDBLite consensus disorder prediction 161 189 - -
Pumo3g03232 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 163 IPR000504 GO:0003723
Pumo3g03232 273 CDD RRM2_NsCP33_like 191 266 - -
Pumo3g03232 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Pumo3g03232 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 157 IPR000504 GO:0003723
Pumo3g03232 273 SUPERFAMILY RNA-binding domain, RBD 80 187 IPR035979 GO:0003676
Pumo3g03232 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Pumo3g03232 273 SMART rrm1_1 191 264 IPR000504 GO:0003723
Pumo3g03232 273 SMART rrm1_1 86 159 IPR000504 GO:0003723
Pumo3g03232 273 FunFam 28 kDa ribonucleoprotein, chloroplastic 186 272 - -
Pumo3g03232 273 PANTHER OS02G0815200 PROTEIN 28 269 - -
Pumo3g03232 273 FunFam Ribonucleoprotein A, chloroplastic 62 185 - -
Pumo3g03232 273 Gene3D - 61 186 IPR012677 -
Pumo3g03232 273 Gene3D - 187 272 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03232 Pumo-Chr3 59632809 59635717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03232 42 273 Eukaryotic Initiation Factors Gene Family AT3G16380 31.034 9.04e-23 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03232 - - gmx:100786275 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03232 3 59632809 59635717 Pumo3g03232 3 59632809 59635717 ECH
Pumo5g02996 5 77997828 78003255 Pumo3g03232 3 59632809 59635717 PCT