Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03224 ATGCAAGGAGAACATATGCGTAAAGGGACTTGGCTTCAAGAGGAAGATGAACAATTGACAAGCTTTGTGGCTCGTCTTGGGGAAAGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGCCTCAAGAGAAGTGGTAAAAGCTGTAGGTTAAGATGGATGAACTATCTTCGTCCAAATCTCAAGCATGGTCCTTTTAGTGCTGAAGAAGAGCAGCTTATTGTTCAGCTTCAGCAGCAATTGGGTAACAAGTGGGCAAAGATTGCTCGGAAACTTCCAGGAAGAACTGACAATGAAATCAAGAATTACTGGAGAACTCACTTAAGAAAAAGAGCTCAAGTTCAACAAGAAGTCTCAGGAGAATTTAAGTATAAATTAGAAATTGCAACACAAGAAGTCAACCAGAAAAGCATTGACATGGATTCCAAGGATTACAAACATGGAAACATTTGCTGTCAAGATAGTGAGTGGGAGACAAAGGATAGTAGCTCCATAGACACTTTACCCTTATCAGATTGGGAATTGAGAAGCTCACCCTATGAAACTAGGGTATTGGATTGGATAGCAGAATTGCAAAATGGATTTGGTGAGAAAGAACTAGAACATGATTGTAATAGCACAGGAAAGTGCAACTATAATCCTCAACAATTTGCAGAGGGATGTGACTCATGGGGTTATTCAGGTTCCTTGTGGGATATCAACTAG 699 0.4077 MQGEHMRKGTWLQEEDEQLTSFVARLGERRWDSLAKVAGLKRSGKSCRLRWMNYLRPNLKHGPFSAEEEQLIVQLQQQLGNKWAKIARKLPGRTDNEIKNYWRTHLRKRAQVQQEVSGEFKYKLEIATQEVNQKSIDMDSKDYKHGNICCQDSEWETKDSSSIDTLPLSDWELRSSPYETRVLDWIAELQNGFGEKELEHDCNSTGKCNYNPQQFAEGCDSWGYSGSLWDIN 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03224 232 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Pumo3g03224 232 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Pumo3g03224 232 SMART sant 7 57 IPR001005 -
Pumo3g03224 232 SMART sant 60 108 IPR001005 -
Pumo3g03224 232 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Pumo3g03224 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Pumo3g03224 232 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Pumo3g03224 232 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Pumo3g03224 232 FunFam Myb transcription factor 8 60 - -
Pumo3g03224 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Pumo3g03224 232 Gene3D - 1 61 - -
Pumo3g03224 232 CDD SANT 10 55 IPR001005 -
Pumo3g03224 232 CDD SANT 81 106 IPR001005 -
Pumo3g03224 232 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 159 - -
Pumo3g03224 232 Gene3D - 62 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03224 Pumo-Chr3 59554874 59556324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03224 4 111 MYB Transcription Factor Family AT5G59780 62.963 1.46e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g03224 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03224 K09422 - gmx:100783472 432.565