Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03223 ATGCTCCAAGCAAGCTGCATTTTACTCTTTCCCATTCTGGCCTCATTTTTGCCTCATGGAACACCAATGCTCAACCTCACTCTCCCAGGACAACACCCAGACCCTGAAGCCGTTGCTCGAGAAGTTCATAGAAAAGTGAATGCTTCAATGGCAAGAAGGGAAATGCTGGGAGTGTCAGAGAAAGATGTAGCATCCTGCCTAACAGGGAACCCCATTGATGATTGTTGGAAATGCGACCCAGATTGGGCCAACAACAGGCAGAGGCTAGCAGATTGTGCAATTGGGTTCGGACAAAACGCAAAGGGAGGGAAAGGTGGCCAATTTTACATAGTCACTGATTCCTCAGATGAGGACCCTGTGAACCCAAAACCTGGGACACTTAGATATGCAGTGATACAGAATGAGCCACTGTGGATCGTGTTCCCAAGTAACATGATGATTAAGCTGTCTCAGGAACTCATCTTTAACAGCTACAAGACCATTGATGGGCGTGGAGCTGATGTGCACATTGTGGGTGGAGGCTGCATTACTCTTCAGTATATTAGCAATGTCATCATTCACAACATTCATATACACCATTGTCACCCCTCTGGGAACGCTAACGTGCGGTCGAGTCCAGAGCACTACGGGTACCGGACCGAATCGGACGGGGACGGGGTGTCGATCTTCGGGTCGCGCGACATCTGGATCGACCACTGCACCCTCTCGCGGTGCAAGGACGGGCTGATCGACGCGGTGATGGGCTCGACCGCGATCACGGTCTCCAACAACCACTTCTCGCACCACAACGACGTGATGCTCTTAGGCCACAGCGACCACTACCTCCCGGACTCCGCCATGCAGGTCACCATCGCCTTCAACCACTTCGGCGAGGGCCTCGTCCAACGCATGCCCCGCTGCCGCCTCGGCTACATCCACGTCGTCAACAACGACTTCACGCGCTGGGAGATGTACGCCATCGGGGGCAGTGCGCACCCCACCATTAACAGCCAGGGGAATCGCTACACTGCGCCGGAGGATCCCTACGCCAAGCAGGTTACCAAGAGATTGGACGCTGGAGAAGGAGAGTGGACCGGGTGGAATTGGAGGTCCGAAGGGGATGTTATGCTCAATGGCGCGTTTTTCGTTGCTTCCGGTGGTGTTGCCGAACCTAACTACCATAATGCTTACAGCGTCGAACCCAAGAACGTCGATCACATTTCGCTACTTACCATGTCCGCGGGCGTTCTCGGCGTTGCCAGGGACAATAATCTGGGAATGTGGACCAGAGGGCCCAATGATGGTGGTGTATATTTTTCAGATTCGGGCCCAGAATACACGGACGACATGTCCCTCAGCACAAAGCCGTTGCTACCTTCACGTACTTTGACTCTTGTATCTGCACTTGTTGCATTGTTATGCTTCTTAGGTCATACAACAACCTCAACAACAGTTCTATAA 1440 0.5278 MLQASCILLFPILASFLPHGTPMLNLTLPGQHPDPEAVAREVHRKVNASMARREMLGVSEKDVASCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDEDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGVSIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITVSNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSAHPTINSQGNRYTAPEDPYAKQVTKRLDAGEGEWTGWNWRSEGDVMLNGAFFVASGGVAEPNYHNAYSVEPKNVDHISLLTMSAGVLGVARDNNLGMWTRGPNDGGVYFSDSGPEYTDDMSLSTKPLLPSRTLTLVSALVALLCFLGHTTTSTTVL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03223 479 PANTHER PECTATE LYASE 18-RELATED 31 413 IPR045032 GO:0030570
Pumo3g03223 479 Gene3D - 69 411 IPR012334 -
Pumo3g03223 479 Pfam Pectate lyase 153 333 IPR002022 -
Pumo3g03223 479 SMART amb_all 144 341 IPR002022 -
Pumo3g03223 479 SUPERFAMILY Pectin lyase-like 60 384 IPR011050 -
Pumo3g03223 479 FunFam Pectate lyase 69 411 - -
Pumo3g03223 479 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Pumo3g03223 479 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Pumo3g03223 479 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Pumo3g03223 479 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Pumo3g03223 479 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Pumo3g03223 479 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Pumo3g03223 479 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Pumo3g03223 479 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03223 Pumo-Chr3 59541790 59549392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03223 1 472 Polysaccharide Lyase AT3G53190 70.000 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03223 K01728 - gmx:100815062 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03223 3 59541790 59549392 Pumo3g03223 3 59541790 59549392 ECH
Pumo5g03093 5 79260108 79264607 Pumo3g03223 3 59541790 59549392 PCT