Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03218 ATGGCGTTCCGCAGCGCCATCGTGCGCAGAGCCCAAGAGGCCACTCACTGCGACACGTGGCGAGCCGCTCTCTCCGAATTCATCTCCACACTCATCTTCGTCTTCGCCGCCTCCGGCTCCGCCGTCGCCGTCAACAAGCTCGCCGTCGACAAGCCCTCCGCTCTCGTCATCGCCGCCCTCGCCCACGCCTTCGCCCTCTTCGTCGCCGTCTCTGTAAGTGCCAACATCTCCGGCGGCCACGTCAACCCCGCCGTCACCTTCGGCGCCTTCGTCGGCGGCAACCTCACCTTGCTCCGCTGCGTCCTCTTCTGGATCGCCCAGATCCTCGGCTCCGTCGTCGCGTGCTTGCTCCTCAAATTCACCACCGGCGGACAGGGTGTACCGGTTTTTAAACTTTCGAGTGGTGTGGGAGTGGGGAACGCGGTGGTGTTGGAGATGGTGATGACGTTCGGGTTGGTTTACACGGTGTACGCGACTACCGTTGACCCCAGGAGCAGGAGGGGTACTTCGGGATTGGGAGTGATAGCGCCAATTGTGATTGGGTTCATCGTTGGAGCGAATATTTTGGTGGGTGGGCCTTTCGATGGGGCCTCCATGAACCCGGCTGCGTCGTTTGGGCCTGCTGTGGTGGGCTGGAGCTGGAAAAACCATTGGGTTTACTGGGTTGGGCCTCTCGTTGGTGGTGGCCTTGCTGGCTTTACGTATGAGCTTATCTTTGTTAGCCACAGCCGCCAGAGGTTCCGCAGAAGTTATAATTATTATTAA 765 0.5974 MAFRSAIVRRAQEATHCDTWRAALSEFISTLIFVFAASGSAVAVNKLAVDKPSALVIAALAHAFALFVAVSVSANISGGHVNPAVTFGAFVGGNLTLLRCVLFWIAQILGSVVACLLLKFTTGGQGVPVFKLSSGVGVGNAVVLEMVMTFGLVYTVYATTVDPRSRRGTSGLGVIAPIVIGFIVGANILVGGPFDGASMNPAASFGPAVVGWSWKNHWVYWVGPLVGGGLAGFTYELIFVSHSRQRFRRSYNYY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03218 254 PANTHER AQUAPORIN-8 9 242 IPR034294 -
Pumo3g03218 254 SUPERFAMILY Aquaporin-like 12 246 IPR023271 -
Pumo3g03218 254 ProSitePatterns MIP family signature. 80 88 IPR022357 -
Pumo3g03218 254 Pfam Major intrinsic protein 14 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g03218 254 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Pumo3g03218 254 FunFam Probable aquaporin TIP1-1 4 251 - -
Pumo3g03218 254 PRINTS Major intrinsic protein family signature 99 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g03218 254 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g03218 254 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g03218 254 PRINTS Major intrinsic protein family signature 218 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g03218 254 PRINTS Major intrinsic protein family signature 62 86 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g03218 254 PRINTS Major intrinsic protein family signature 181 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo3g03218 254 CDD MIP 21 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03218 Pumo-Chr3 59460992 59462889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03218 1 250 Major Intrinsic Protein MIP AT2G36830 66.008 8.05e-114 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03218 K09873 - gmx:100820403 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03218 3 59460992 59462889 Pumo5g03048 5 78518517 78521284 ECH
Pumo3g03218 3 59460992 59462889 Pumo3g01289 3 20453623 20456530 ECH
Pumo3g03218 3 59460992 59462889 Pumo3g03218 3 59460992 59462889 ECH
Pumo3g03218 3 59460992 59462889 Pumo4g03877 4 79115547 79116702 ECH
Pumo5g03096 5 79460788 79462652 Pumo3g03218 3 59460992 59462889 PCT