Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03217 ATGCAAGTCCAAGAGGAATTACTTGTGGTTTCCAAGGATCACACCCAAATGATGATGATCAAGGGCAAGCGCACCAAGCGTCAAAGGGCACCATCCCCTCTTAGGCTAGCCATGCCTAATTCAACTTCAAGTAGCACTAACAATTCCATTGATAGTGCCACAACCTCCTCACCCGCAATTGAATTGAGAGAAGATGAAGACATGGCGAATTGTCTCATTCTTCTGGCTCAAGGAAGACACCACGTGGCAGCACCAACGTTGCAGCATCACAACAACAACGACAACAACCACAAGTCAACAAACCTATACCTTTACCAGTGCAAGACTTGCAACAGATGCTTCCCTTCATTCCAAGCACTTGGAGGACACAGAGCCAGTCACAAGAAGCCTAAGCAAAACGGCACCTTTTCAGAAGCAGTTACTAACTTCACTGAAGAGAATGATCATCATCGTTATGACCCCACCACAACAAACACCACCCTCTCCTTGAAAATACCAAATGGGGTGGTTAATAATTTGTGTAGCACCAGCACTGCCACCACAACAACAAAAGCTAAGGTTCACGAGTGTTCTATCTGTGGTGCTGAATTCTCTTCTGGGCAAGCCTTGGGGGGCCACATGAGGCGTCACAGAACTCTTGTGAATGCTTCTGTAACAACTTCTATGAGTGGTGGAAATGTTGGTGGAAGCAATGAATTTCAAGAAGCCAAGAAACCCTTGAAGTTGGACTTGAATCTTCCAGCACCAGAGGATGATCATAGAGAATCCAAGTTTTCGTTTCAGCAAAGAGAAAAAAACGTTATTGTCTTCTCTACATCAGCTTCTTTGGTGGATTGCCATTACTGA 846 0.4504 MQVQEELLVVSKDHTQMMMIKGKRTKRQRAPSPLRLAMPNSTSSSTNNSIDSATTSSPAIELREDEDMANCLILLAQGRHHVAAPTLQHHNNNDNNHKSTNLYLYQCKTCNRCFPSFQALGGHRASHKKPKQNGTFSEAVTNFTEENDHHRYDPTTTNTTLSLKIPNGVVNNLCSTSTATTTTKAKVHECSICGAEFSSGQALGGHMRRHRTLVNASVTTSMSGGNVGGSNEFQEAKKPLKLDLNLPAPEDDHRESKFSFQQREKNVIVFSTSASLVDCHY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03217 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 188 210 IPR013087 -
Pumo3g03217 281 Gene3D Classic Zinc Finger 102 210 - -
Pumo3g03217 281 MobiDBLite consensus disorder prediction 35 56 - -
Pumo3g03217 281 MobiDBLite consensus disorder prediction 21 56 - -
Pumo3g03217 281 Pfam C2H2-type zinc finger 187 211 - -
Pumo3g03217 281 Pfam C2H2-type zinc finger 105 130 - -
Pumo3g03217 281 PANTHER ZINC FINGER PROTEIN ZAT5 27 263 - -
Pumo3g03217 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Pumo3g03217 281 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Pumo3g03217 281 SUPERFAMILY beta-beta-alpha zinc fingers 104 210 IPR036236 -
Pumo3g03217 281 SMART c2h2final6 188 210 IPR013087 -
Pumo3g03217 281 SMART c2h2final6 105 127 IPR013087 -
Pumo3g03217 281 ProSitePatterns Zinc finger C2H2 type domain signature. 190 210 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03217 Pumo-Chr3 59431306 59432332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03217 7 281 C2H2 Transcription Factor Family AT5G03510 40.532 2.00e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g03217 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03217 - - gmx:100815595 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03217 3 59431306 59432332 Pumo5g03097 5 79480984 79482126 ECH
Pumo3g03217 3 59431306 59432332 Pumo3g03217 3 59431306 59432332 ECH
Pumo3g03217 3 59431306 59432332 Pumo4g03825 4 78471693 78472876 ECH
Pumo5g03097 5 79480984 79482126 Pumo3g03217 3 59431306 59432332 PCT