Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03216 ATGGCGGTTCCAGGGAGGCGCAACGGCATGAACGACGACGAAGAGGATTTAGACGACAACGCCCTTTTCGAGGAACAAGGTCTCGTCGAAGACGACACCGATACCCCTCCTCACCTCCGCGACCTCTCCGCCGCAGCTCAGCTCGGCGATGTCCATGCCCTCCGTCTCGCTCTTGATAACTTGACTGGTAGTATTGATGAGCCAGTGGAGGATGGGGATACTGCTCTTCATTTGACATGTTTATATGGCCATTTGGCTTGTGTCCAGCTGCTACTAGAAAGAGGAGCGAACATTGAGGCTAAGGATGAAGAGGGTGCTATTCCTTTGCACGATGCTTGTGCAGGAGGATTTACCGAGATAGTCCAACTGCTGCTTAACAGAGCTAATGATGCAGAACATATAAAAAGAATGCTAGAATCAGTTGATTCTGAGGGTGATACTCCTCTCCATCACGCTGCAAGAGGTGAACATGTTGATGTAATTAGGTTGTTGCTGTCTAATGGCGCATCTCCCACAAAGGCAAACTTATATGGAAAGGCCCCGGCAGATTTACCTGAACAGGACACAGATGCTCGGAGGCTGCTTGAAGCTGCAGTTCTTGCCATGGCATGCCAATAG 618 0.5016 MAVPGRRNGMNDDEEDLDDNALFEEQGLVEDDTDTPPHLRDLSAAAQLGDVHALRLALDNLTGSIDEPVEDGDTALHLTCLYGHLACVQLLLERGANIEAKDEEGAIPLHDACAGGFTEIVQLLLNRANDAEHIKRMLESVDSEGDTPLHHAARGEHVDVIRLLLSNGASPTKANLYGKAPADLPEQDTDARRLLEAAVLAMACQ 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03216 205 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
Pumo3g03216 205 ProSiteProfiles Ankyrin repeat region circular profile. 104 130 - -
Pumo3g03216 205 Pfam Ankyrin repeat 71 102 IPR002110 GO:0005515
Pumo3g03216 205 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Pumo3g03216 205 FunFam BRCA1-associated RING domain protein 1 36 203 - -
Pumo3g03216 205 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Pumo3g03216 205 Gene3D - 36 202 IPR036770 -
Pumo3g03216 205 ProSiteProfiles Ankyrin repeat profile. 144 176 IPR002110 GO:0005515
Pumo3g03216 205 PANTHER SOWAH (DROSOPHILA) HOMOLOG 35 199 - -
Pumo3g03216 205 ProSiteProfiles Ankyrin repeat region circular profile. 144 170 - -
Pumo3g03216 205 SUPERFAMILY Ankyrin repeat 42 184 IPR036770 -
Pumo3g03216 205 SMART ANK_2a 144 173 IPR002110 GO:0005515
Pumo3g03216 205 SMART ANK_2a 104 133 IPR002110 GO:0005515
Pumo3g03216 205 SMART ANK_2a 71 100 IPR002110 GO:0005515
Pumo3g03216 205 Pfam Ankyrin repeats (3 copies) 104 173 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03216 Pumo-Chr3 59421488 59423711 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03216 66 187 Ion Channels AT2G26650 30.137 2.94e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03216 - - gmx:100527544 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03216 3 59421488 59423711 Pumo3g03216 3 59421488 59423711 ECH