Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03187 ATGGAATCCTCCACCACCACCGTTTCCCCCGATTCCGAAAACGACACGCCGCACCCGCGAGTGAACGGCTACGTCGTTTACACTCGCCGAAAGCGGCCCCTCCATTCCGGTAATGACGCCGCCAAGAGACTCAGAACAGCTGAGATTAAAGTCGAAGCTCGCCACGGCGACGACGACGACGTCGTTTTCAAGCGCCCCAAGGTCGAGTCTGTTGCTGCGAATGCCGACGAATTAAAAATGGAGGAATTGAAAACGACGTCGTCGTCGTCTAAGAAGATCATTGTCGTCAGCAAGAAGCCCGTCACCGTCAAGGAGCTCTTCGAAACCGGCTTGCTCGATGGGGTTCCGGTCGTTTACGTCGGCTGCAAAAAGGATTCAACTACGGAATTGCGTGGTGTAATTAAAGATGGGGGAATCTTGTGCTCATGCCGTCTGTGCAATGGACGCAGGGTTGTGCCACCTTCCCAATTCGAGATTCATGCATGCAACATATATAAGAGGGCAGCACAATACATTTGCCTTGAAAATGGGAAGAGCCTGCTTGAGCTATTGAGAGCATGCAGGGCAGCTCCACTACATACTTTGGAGGCGACCATTCAAAATTTTATTAATTCTCCTCCTGAGGAGAAATATTTTACTTGCAAAAGTTGCAGAGGGTGTTTCCCTTCTTCCAATGTGGAAAGAGTGGGGCTTTTATGTCTATCTTGCGTCGAATCAAGGAAATCTGAAAAAAGTTCTATTCATGCCGTTGGCAAAAGAGTCAGGTCCCCTCGGCCAGTATTATTCTCCCGTTCATGTTCATGTTGTACTTCTGAACCGTGTATCTCTCCTCAAACTAAGAAACAGTGGAAGACAAGAACAAAGTCATCAAAACTGTCGGTAAAATTGAAGACTGCTCCAATTACTTCAAAGTGTTTATCTCCACAAAATAAAAGTCAGTGGAGGATCTCTAAAAGGTATCAACGAATACATAAATTAATTTTTGAAGAGGATGGATTGCCTAATGGAGCTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAGGGTATCAAAACACGCTCTGGAATTGTCTGTCGATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCGTACATCTATACGTCAAATGGGGTGTCACTCCATGAGTTAGCTATATTTCTCTCAAAAGATCACAAATGCACTACAAAGCAGAATGATTATGTATGTGTTGTTTGTTGGGATGGTGGAAACCTGTTGCTTTGTGATGGATGTCCAAGGGCTTTTCATAAAGAATGTGCATCCGTATCAAGTATTCCTCGGGGTGAGTGGTACTGTCAAATTTGTCAACACACGTTCCTCAGAGAAAGGCCTGTGTTATACAATGCCGATGCTGTGGCAGCTGGAAGGGTAGAAGGTGTTGATCCTATTGAGCAGATTGCCAAGAGATGCATTCGCATAGTAAAAGACATAGGAGCTGAGATTGGTGGATGTGTTTTATGCAGGAGTTCTGACTTCAGCAGATCAGGATTTGGTCCGCGCACAATTATAATCTGTGATCAGTGTGAAAAGGAATATCATGTTGGCTGCTTGAGGGATCATAAGATGGCATATTTGAAGGAGTTGCCAGAAGGGGATTGGTTTTGTTGCAATGATTGCACAAGAATACATTCTACTTTGGAGAATCTCCTGGTTAGGGTGGCTGAGAGACTCCCTGAATGTCTTTTGGATGTTATAAAGAAGAAACAAGTGGAAAGATGTTTAGAACCCCTTAATGAGATTGATGTAAGATGGAAACTTCTTAATGGAAAAATTGCATCTCCTGAAACTAGGCCATTGCTTTTGGAGGCAGTGTCCATGTTTCATGAATGCTTTGATCCTATAGTTGATCCAGCTGCTGGACGTGACCTTATTCCTTCCATGGTTTATGGAAGGAATTTGCAGACTCAGGATTTTGGAGGAATGTATTGTGCATTATTGATTGTCAATTCATCTGTGGTATCCGCGGGCATGATTCGAATTTTTGGTAGAGATATTGCCGAACTCCCTTTAGTTGCAACAAGATATAAGAACCGCAGAAAGGGCTACTTCCAAACACTTTTCGCATGCATCGAGAGGCTGCTGGCTTTTTTGAATGTGAAAAACCTCGTGCTACCAGCTGCTGAAGAAGCTGAATCTATATGGATAGAAAAATTCGGGTTTAGCAAGATGAAACCTGACCAGCTTACCAACTATAGAATGAACTGCCATCAAATTATGGCATTCAAAGGGACAATTATGCTTCACAAAACGGTGCCTCGATGTCGGGTCACCAATACTCAATCATGA 2352 0.4435 MESSTTTVSPDSENDTPHPRVNGYVVYTRRKRPLHSGNDAAKRLRTAEIKVEARHGDDDDVVFKRPKVESVAANADELKMEELKTTSSSSKKIIVVSKKPVTVKELFETGLLDGVPVVYVGCKKDSTTELRGVIKDGGILCSCRLCNGRRVVPPSQFEIHACNIYKRAAQYICLENGKSLLELLRACRAAPLHTLEATIQNFINSPPEEKYFTCKSCRGCFPSSNVERVGLLCLSCVESRKSEKSSIHAVGKRVRSPRPVLFSRSCSCCTSEPCISPQTKKQWKTRTKSSKLSVKLKTAPITSKCLSPQNKSQWRISKRYQRIHKLIFEEDGLPNGAEVAYYARGQKLLEGIKTRSGIVCRCCNTEISPSQFEVHAGWASRRKPYAYIYTSNGVSLHELAIFLSKDHKCTTKQNDYVCVVCWDGGNLLLCDGCPRAFHKECASVSSIPRGEWYCQICQHTFLRERPVLYNADAVAAGRVEGVDPIEQIAKRCIRIVKDIGAEIGGCVLCRSSDFSRSGFGPRTIIICDQCEKEYHVGCLRDHKMAYLKELPEGDWFCCNDCTRIHSTLENLLVRVAERLPECLLDVIKKKQVERCLEPLNEIDVRWKLLNGKIASPETRPLLLEAVSMFHECFDPIVDPAAGRDLIPSMVYGRNLQTQDFGGMYCALLIVNSSVVSAGMIRIFGRDIAELPLVATRYKNRRKGYFQTLFACIERLLAFLNVKNLVLPAAEEAESIWIEKFGFSKMKPDQLTNYRMNCHQIMAFKGTIMLHKTVPRCRVTNTQS 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03187 783 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 404 481 - -
Pumo3g03187 783 SMART PHD_3 505 562 IPR001965 -
Pumo3g03187 783 SMART PHD_3 417 458 IPR001965 -
Pumo3g03187 783 SUPERFAMILY FYVE/PHD zinc finger 403 460 IPR011011 -
Pumo3g03187 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 480 IPR013083 -
Pumo3g03187 783 ProSitePatterns Zinc finger PHD-type signature. 418 457 IPR019786 -
Pumo3g03187 783 SUPERFAMILY FYVE/PHD zinc finger 500 563 IPR011011 -
Pumo3g03187 783 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 661 746 IPR016181 -
Pumo3g03187 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 564 IPR013083 -
Pumo3g03187 783 PANTHER AUTOIMMUNE REGULATOR 59 772 - -
Pumo3g03187 783 MobiDBLite consensus disorder prediction 1 16 - -
Pumo3g03187 783 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 502 564 - -
Pumo3g03187 783 ProSiteProfiles Zinc finger PHD-type profile. 415 460 IPR019787 -
Pumo3g03187 783 MobiDBLite consensus disorder prediction 1 23 - -
Pumo3g03187 783 Pfam Tify domain binding domain 352 401 IPR032308 -
Pumo3g03187 783 Pfam Tify domain binding domain 132 187 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03187 Pumo-Chr3 58501918 58513378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03187 80 773 PHD Transcription Factor Family AT2G36720 50.614 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03187 - - gmx:100798276 1465.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03187 3 58501918 58513378 Pumo3g03187 3 58501918 58513378 ECH
Pumo5g03108 5 79836810 79845519 Pumo3g03187 3 58501918 58513378 PCT