Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03180 ATGAATTTGAGAGATACAGCTATTGAGGAGGTGATGCTGACGCGTAGCCGACCCAACCTTGTGTCACTTCCAACAAGTGAATCCCAATGCCTTCCTCACTCAACAACCATTAAGGCATATTACATTATCCATTCATCAATTTCCACCATGAACACAATGTTGGTGCCTCCATGGCTTGAGCCACTCCTAAACACATCATTTTTCAATGTATGTCGGATTCATGGAGATGTTGTGAGGAGAGAATGTAACATGTTCTATCTGGATTGTAATGAGAATGTGTTTTGCTTTTATTGTCGTTCCTCAAAACACAAGGATCAACAAGTCATTCAGATAAGGAGATCTTCGTATCACGTTGTAGTGAGGGTGGCGGAAATTCAAAAAGTGTTGGACATTAGTGGAGTTCAAACATATGTGATCAACGGTGCCAGAGTTCTATTTCTGAATGAAAGGCCTCAACCAAAGTCTGGAAAAGTAGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCTATTTCGCTTCTGTTCTTTGGGGTGTAAGACAGAAATTGAACATGGCATAATGTATTAA 576 0.4062 MNLRDTAIEEVMLTRSRPNLVSLPTSESQCLPHSTTIKAYYIIHSSISTMNTMLVPPWLEPLLNTSFFNVCRIHGDVVRRECNMFYLDCNENVFCFYCRSSKHKDQQVIQIRRSSYHVVVRVAEIQKVLDISGVQTYVINGARVLFLNERPQPKSGKVVAHICEICGRSLLDLFRFCSLGCKTEIEHGIMY 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03180 191 Pfam PLATZ transcription factor 112 182 IPR006734 -
Pumo3g03180 191 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 50 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03180 Pumo-Chr3 58421051 58422489 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Pumo3g03180 PLATZ 5.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03180 - - gmx:100809455 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03110 5 79897779 79900204 Pumo3g03180 3 58421051 58422489 PCT