Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03176 ATGGCGGTTCCCGCGACGGTCGCCGCCGCTCCGGCATCGCTTTACGTCGGAGACCTCCACCCTGACGTCGACGACCACCAACTCTACGAGGCTTTCGCGGAGTTTGAAAGCATGGCTTCCGTTCGCGTCTGCAGAGACTCCATGACGAGGAACTCGCTCTGTTACGGTTACGTCAACTTCATGTCTCAGCAAGACGCAATTCGTGCAATCAAGTTGAAAAACAATTCTTATCTGAATGGAAAAGTGATAAGGGTCATGTGGTCACATCGTGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGGATCCATAGATAATGCGGGGCTACATGATTTATTTCAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATAATGCCATTGAGAAGCTGAATGGCTCTTCTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCTGGCCATGATGCTAAATATACAAATTTGTACATTAAAAACTTGGACTCAGATATTACAGAAGCACTTCTTGAGGAAAAGTTCTCTTCTTTTGGGAAAATTATTAGCTTGGCTATTGCAAAGGATGACAATGGGCTATCAAAGGGTTTTGCATTTGTGAACTATGAGAATCCAGATGATGCTAGAAAGGCGATGGAAGCAATGAATGGATTACAATTTGGTAGTTCAAAGAATCTGTATGTAGCTAGGGCACAAAAAAAGGCTGAACGTGAGCAAATCTTGCACCGTCAATTTGAGGAGAAACGTAAGGAACAAATAATGAAATATCAGGTAATTCCATGCCATTTCTCCTACATTGAACTGGTCAATTTCAGTTTTCTTAGCATGTCTTCATTCAACTTCCAGGCATCTAATTTGTATGTGAAGAACATTGATGATGATGTAACCGACAAAGAACTACGAGATCTGTTTAGTTCATGTGGCAGTATAACTTCTGTAAAAGTTATGCGAGATGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCAACCCTGAGGAGGCTAATAAAGCTGTGAGATCTTTTAATGGATGCATGTTCCACCGTAAACCACTGTATATTGCTATTGCTCAGAGGAAAGAGGATAGGAAAACACAGTTGAAGCTCCACTATGCACCGCCACAAGCAGGATTGGATGGATCTTCAACTCCAGTTATCCCTGGTGGATTTCCACCTTACTTCTACCCTGGTGTTGCTTCACAGGTGCTTCAATCTGGGCTGTTGTATCAACCTCTGGGATTGAGGTCAGGATGGAGGGCTAATGACTTTGCGCCTCCCACTAGATCATTTCAACAATCACAGGTTCCTAACATTACTAGGAATCATAGGCAAAACAGGGGCAGGATGAATGGGAATATGAATATGAATTCACTGGGAAAAGCTCACTCTGGTCCTAGTGTAGCTGCAAAGATTCCAGGAATGCTTTTGGAGATGGACAATGGAGAATTGAAGCTTCTCCTGGAATCAAGAGAGACTTTCTGCATAAGTGGAAGAAGCCGTGCAAGTGATGTGGTTGTGCTCAGTTGA 1641 0.4308 MAVPATVAAAPASLYVGDLHPDVDDHQLYEAFAEFESMASVRVCRDSMTRNSLCYGYVNFMSQQDAIRAIKLKNNSYLNGKVIRVMWSHRDPNARKSGRGNVFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSEDGKSKGYGFVQFESEESANNAIEKLNGSSVRDKQIYVGKFVRKGDRILPGHDAKYTNLYIKNLDSDITEALLEEKFSSFGKIISLAIAKDDNGLSKGFAFVNYENPDDARKAMEAMNGLQFGSSKNLYVARAQKKAEREQILHRQFEEKRKEQIMKYQVIPCHFSYIELVNFSFLSMSSFNFQASNLYVKNIDDDVTDKELRDLFSSCGSITSVKVMRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRKEDRKTQLKLHYAPPQAGLDGSSTPVIPGGFPPYFYPGVASQVLQSGLLYQPLGLRSGWRANDFAPPTRSFQQSQVPNITRNHRQNRGRMNGNMNMNSLGKAHSGPSVAAKIPGMLLEMDNGELKLLLESRETFCISGRSRASDVVVLS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03176 546 Gene3D - 498 534 - -
Pumo3g03176 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Pumo3g03176 546 SMART poly_2 480 546 IPR002004 GO:0003723
Pumo3g03176 546 FunFam Polyadenylate-binding protein 101 181 - -
Pumo3g03176 546 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Pumo3g03176 546 SUPERFAMILY RNA-binding domain, RBD 184 279 IPR035979 GO:0003676
Pumo3g03176 546 Coils Coil 264 284 - -
Pumo3g03176 546 CDD RRM4_I_PABPs 320 397 - -
Pumo3g03176 546 SUPERFAMILY PABC (PABP) domain 462 531 IPR036053 GO:0003723
Pumo3g03176 546 CDD RRM2_I_PABPs 98 174 IPR045305 -
Pumo3g03176 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 322 390 IPR000504 GO:0003723
Pumo3g03176 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 259 IPR000504 GO:0003723
Pumo3g03176 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pumo3g03176 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Pumo3g03176 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 269 IPR000504 GO:0003723
Pumo3g03176 546 Gene3D - 5 100 IPR012677 -
Pumo3g03176 546 Gene3D - 179 287 IPR012677 -
Pumo3g03176 546 SMART rrm2_1 101 173 IPR003954 GO:0003676
Pumo3g03176 546 SMART rrm2_1 321 393 IPR003954 GO:0003676
Pumo3g03176 546 SMART rrm2_1 13 86 IPR003954 GO:0003676
Pumo3g03176 546 SMART rrm2_1 192 264 IPR003954 GO:0003676
Pumo3g03176 546 FunFam Polyadenylate-binding protein 4 99 - -
Pumo3g03176 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Pumo3g03176 546 Gene3D - 101 178 IPR012677 -
Pumo3g03176 546 Gene3D - 308 406 IPR012677 -
Pumo3g03176 546 FunFam Polyadenylate-binding protein 182 277 - -
Pumo3g03176 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 397 IPR000504 GO:0003723
Pumo3g03176 546 FunFam Poly(A) binding protein cytoplasmic 1 like 314 401 - -
Pumo3g03176 546 SUPERFAMILY RNA-binding domain, RBD 307 406 IPR035979 GO:0003676
Pumo3g03176 546 PANTHER RNA BINDING PROTEIN 12 75 - -
Pumo3g03176 546 SMART rrm1_1 321 393 IPR000504 GO:0003723
Pumo3g03176 546 SMART rrm1_1 101 173 IPR000504 GO:0003723
Pumo3g03176 546 SMART rrm1_1 13 86 IPR000504 GO:0003723
Pumo3g03176 546 SMART rrm1_1 192 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03176 Pumo-Chr3 58373812 58378919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03176 12 533 Eukaryotic Initiation Factors Gene Family AT2G36660 49.141 1.24e-173 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03176 K13126 - gmx:100798828 812.757