Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03161 ATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCCCGAGCAGATTCTTCCTTGAGCTTCCTTTACAACTACAACTACACCCCATATCCAGGAATGGAAGTGAAGCAACAAACACTGGCAGAGACAAGTAATTCATCCATGGAAAAAATGAACTGCGGGAACCAGGAGAAGAAGAAGAGATTAACAAGTGACCAGTTGGACTCGTTGGAGAGTAGTTTTCAGAAGGAGATAAAGCTAGATCCTGATAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAGAATAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCGCTTAAACAGGAATTTGATGTCATATCCAAGGAAAAACAGAAGCTCGAGGAAGAGGTGATGAAGTTGAAGACTATGCTGAGAGAGCAAGCTTCTAGAACCCAAGTGTCAACAGGATACACAGAAATCTCTGGGGAAGAAACAGTGGAAAGCACGTCAGAGGCACTGCGTTGCTCCAAACTCGGAACACTGCACCAGCAGCAGAATAATATTGGAGAGGGAAACTGTTCTTACACTTTGGAAGATCATTACAACACAGTTCCAGTACTACCCTATTGGCCTGGGGTCCCTTATTATCCCTAA 660 0.447 MEWNGSTRRYVPRADSSLSFLYNYNYTPYPGMEVKQQTLAETSNSSMEKMNCGNQEKKKRLTSDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKTMLREQASRTQVSTGYTEISGEETVESTSEALRCSKLGTLHQQQNNIGEGNCSYTLEDHYNTVPVLPYWPGVPYYP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03161 219 MobiDBLite consensus disorder prediction 40 63 - -
Pumo3g03161 219 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Pumo3g03161 219 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Pumo3g03161 219 Pfam Homeobox associated leucine zipper 112 146 IPR003106 GO:0006355|GO:0043565
Pumo3g03161 219 SMART HOX_1 55 116 IPR001356 GO:0003677
Pumo3g03161 219 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Pumo3g03161 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 173 IPR045224 GO:0003700
Pumo3g03161 219 SUPERFAMILY Homeodomain-like 46 114 IPR009057 -
Pumo3g03161 219 Coils Coil 104 152 - -
Pumo3g03161 219 CDD homeodomain 57 113 IPR001356 GO:0003677
Pumo3g03161 219 Pfam Homeodomain 57 111 IPR001356 GO:0003677
Pumo3g03161 219 Gene3D - 50 120 - -
Pumo3g03161 219 FunFam Putative homeobox-leucine zipper protein ATHB-51 54 117 - -
Pumo3g03161 219 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03161 Pumo-Chr3 58195497 58197493 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03161 53 151 Homeobox Transcription Factor Family AT2G36610 67.290 1.92e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo3g03161 Homeodomain 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03161 - - gmx:100778007 413.69