Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03156 ATGTTGTTCTTGTGCACCCTTTTTGCACTTTCGATTAAGGGTAGTGGAATGTTCTCTGGGTTGGTAGGAGTTGAAAACCCTTTACAACAGCAGCAACAACAACAACAAAACCCTCACCGTTTGCAACAACACCACTCCCAAATGCTTCCTTATGCCACACACCATGACACTGACCCACATCATCCACACCTTCACCAATCAATCAAACAAGGGTACCCTCCCTTTTCAGCCAAGACCAAGCAACAACAACAACAGCAGCAGCAACATTCCCCTCTCAGTGATGATGATGAGCCAGGGTTCCCTGCTGATGATGACCCCAAGAGGAAGGTCTCACCATGGCAGAGAATGAAGTGGACTGACACCATGGTGAGGCTCTTGATAATGGCGGTTTATTACATTGGTGATGAGGCTGGCTCTGAAGGGACTGCTGATAAGAAGAAGTCCTCTGGTTTGATGCAGAAGAAAGGGAAGTGGAAGTCGGTGTCAAGGGCTATGATGGAGAAGGGGTCCTATGTTTCTCCTCAGCAGTGTGAGGATAAGTTCAATGACTTGAACAAGAGGTATAAGAGGGTGAATGATATTCTTGGCAAGGGAACTGCTTGCAGGGTTGTCGAGAATCAGAACTTGTTGGACACAATGGACTTGTCTCCAAAGATGAAAGAGGAGGTTAAGAAGTTGCTCAATTCCAAGCACTTGTTCTTCAGGGAAATGTGTGCTTACCATAATAGTTGTGGCCATGGGAATAACAATGGTCCACAGCAAGGAGAGTCTGGGGGTGAAGTGTCTCAGGCTCAGGCTCAACCACATCAGCAGCAGCAACAACAGCAGCAACAACGATGTTTTCATTCATCAGAGGTGGGGAATTTGGGGGGTTCAGGGGTGGAGGGTTTGAGGATGTTGAAAGTGGGAAATGGGGAAGAGGATGATGATGATGAGGATGAGGATGATGATTCTGAGGATGATTCAGATGAGGATGAAGATGATTCAGGAGAAGGTGGTTCAAGGGGTCATGTGGGGCATGGACATGAAGATATTGAGGATGAGAATGATGGAAGGTCAATGAGGAAGAGGGCAAGGAAAGTAGGGGGGGTTTCTATGTCACCACAGATGATGCAGCAACTGAGTGCTGAGGTGAGTGGTGTGTTCCAAGATGGGGGTAGGAGTGCTTGGGACAAAAAGCAATGGATGAGGAACAGGATAATGCAGTTGGAGGAGCAGCAAATAAGCTACCAAACTCAAGCATTTGAGTTGGAGAAACAAAGGCTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGGGCCAAACTTGAAAATGAACGCAGGAGGCTTGAGAATGAGAGAATGGTTTTGCTCATTCGCCAGAAGGAGCTTGAATTGATGAATATTCAACACCAACAACAGCAGCAGCAGCAGCATCAACAACAACAACAACATTCTTCCACCTAG 1458 0.4691 MLFLCTLFALSIKGSGMFSGLVGVENPLQQQQQQQQNPHRLQQHHSQMLPYATHHDTDPHHPHLHQSIKQGYPPFSAKTKQQQQQQQQHSPLSDDDEPGFPADDDPKRKVSPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTADKKKSSGLMQKKGKWKSVSRAMMEKGSYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLLDTMDLSPKMKEEVKKLLNSKHLFFREMCAYHNSCGHGNNNGPQQGESGGEVSQAQAQPHQQQQQQQQQRCFHSSEVGNLGGSGVEGLRMLKVGNGEEDDDDEDEDDDSEDDSDEDEDDSGEGGSRGHVGHGHEDIEDENDGRSMRKRARKVGGVSMSPQMMQQLSAEVSGVFQDGGRSAWDKKQWMRNRIMQLEEQQISYQTQAFELEKQRLKWARFSSKKEREMERAKLENERRRLENERMVLLIRQKELELMNIQHQQQQQQQHQQQQQHSST 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03156 485 Gene3D - 118 190 - -
Pumo3g03156 485 PANTHER F16F4.11 PROTEIN-RELATED 17 468 - -
Pumo3g03156 485 MobiDBLite consensus disorder prediction 330 357 - -
Pumo3g03156 485 MobiDBLite consensus disorder prediction 248 285 - -
Pumo3g03156 485 Coils Coil 428 457 - -
Pumo3g03156 485 MobiDBLite consensus disorder prediction 306 329 - -
Pumo3g03156 485 MobiDBLite consensus disorder prediction 51 113 - -
Pumo3g03156 485 Pfam Myb/SANT-like DNA-binding domain 115 239 IPR044822 -
Pumo3g03156 485 MobiDBLite consensus disorder prediction 72 93 - -
Pumo3g03156 485 MobiDBLite consensus disorder prediction 248 366 - -
Pumo3g03156 485 Coils Coil 400 420 - -
Pumo3g03156 485 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03156 Pumo-Chr3 58060007 58061808 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo3g03156 Myb_DNA-bind_4 8.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03156 - - gmx:100816661 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03156 3 58060007 58061808 Pumo3g03156 3 58060007 58061808 ECH
Pumo5g03128 5 80045618 80047231 Pumo3g03156 3 58060007 58061808 PCT