Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03154 ATGCACTCGCTCTTGGCACTTAACGGGACCGTCACCACGCGTGACGGCAGATACGAGACCATCTCACGGAAGGCACGCTCCGTCAAACGAGCCTCCCACACACACCTTCTCTCAACGCCCCGTTTCTCTTTCCCTAACGTCCCCGACGACGCCGTAACGTCCTCCCTTATGGCCTCTTGCGACGACGACGACGATTTCTCTCTCCTCCGTGACGACAACCACCACCTCCACCAACCCTACGCGCCGCACCACCACTTCTCCCCCTCCGCCGTCGCCGTCGCCGTCGCCGCCCCCGTCCCGCCCAAGCCCGTCGCAGCCGACGACGCCGAGGACTACGCCAACCCCTTCGACGACGACGGCGCCAGCGAGAAGCGCAAGGACCGCGACGAGATCGGCGAGGGAGCCTCCTCGTACGGATTCAGCAAGAGATCCAAGGCTCCGCCGTCGAGCGGCAACGGCGCCGCCGAGTACCGCAAGGACCGCGAGGAGTGGAGCGACACCGCGATTGTGTGCCTCCTCGAGGCGTACACGGAGAAGTTCACGCAGCTGAATCGGGGAAACCTGAGGGGAAGGGATTGGGAGGAGGTTGCGGCGGTGGTGAGCGAACGGTGCGAGAACCAATCGAAGAGCGTGGAACAGTGTAAGAACAAGGTCGATAACCTAAAGAAGAGGTACAAATTGGAGCGACATAGAATGAGCAGTGGCTGCATTTCCACCAGTCACTGGCCTTGGTTCAAGCAATTGGAACAGATCATCGGAAATTCTCTCCCGGCGAAGTTCTCCGACGAGGATAAAGCGGTTGTTTCAGCCGGAACTTCGCCCAGGCAATCGAAGAGATATGGAGTGGCAACACCCAGCACTGGAGGTCAAGCAAATAGCATGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGAAGGGTAGTCCTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAATATTGACCCTAAGGTTTGTGGTTTGGTTATACATATGTGGCGAATTGTTGTTGGAGGTCGTAATTTCTTCTCTGGAGATGCATGGGTAACTGCGACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGACATCTTGAGAAAGGAAGGGTTGTTATATTTGGTGGCATTGGTTTTGGTTCTGGCAATCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGTGCTTCAGAGCTTAATGCTGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACATTTGAGCACATATCCTTCAGAGAGCTGGGTTCAAGAGGCGTCACCTCTATGGATATGTCAGCGCTAACATTCTGTGAGGAAAATGCTATTCCTGTTGTGGTTTTTAATCTACTGGAACCTGGGAACATCTCAAAAGCCTTGTGTGGAGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGTTAA 1602 0.5275 MHSLLALNGTVTTRDGRYETISRKARSVKRASHTHLLSTPRFSFPNVPDDAVTSSLMASCDDDDDFSLLRDDNHHLHQPYAPHHHFSPSAVAVAVAAPVPPKPVAADDAEDYANPFDDDGASEKRKDRDEIGEGASSYGFSKRSKAPPSSGNGAAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMSSGCISTSHWPWFKQLEQIIGNSLPAKFSDEDKAVVSAGTSPRQSKRYGVATPSTGGQANSMKSKALSNLRWRRVVLKISGAALTGSDTCNIDPKVCGLVIHMWRIVVGGRNFFSGDAWVTATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSVAMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGSGNPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGVTSMDMSALTFCEENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAIS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03154 533 SUPERFAMILY Carbamate kinase-like 303 526 IPR036393 -
Pumo3g03154 533 MobiDBLite consensus disorder prediction 274 295 - -
Pumo3g03154 533 FunFam Uridylate kinase isoform A 296 532 - -
Pumo3g03154 533 Gene3D - 164 227 - -
Pumo3g03154 533 FunFam Aspartate/glutamate/uridylate kinase family protein 164 227 - -
Pumo3g03154 533 Pfam Amino acid kinase family 306 506 IPR001048 -
Pumo3g03154 533 CDD AAK_UMPK-PyrH-Ec 305 527 IPR015963 GO:0005737|GO:0006221|GO:0033862
Pumo3g03154 533 MobiDBLite consensus disorder prediction 117 133 - -
Pumo3g03154 533 Pfam Myb/SANT-like DNA-binding domain 161 251 IPR044822 -
Pumo3g03154 533 Gene3D - 299 527 IPR036393 -
Pumo3g03154 533 PANTHER URIDYLATE KINASE 157 532 - -
Pumo3g03154 533 Coils Coil 204 231 - -
Pumo3g03154 533 MobiDBLite consensus disorder prediction 102 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03154 Pumo-Chr3 58041621 58046470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03154 139 255 Trihelix Transcription Factor Family AT3G14180 36.667 1.28e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo3g03154 AA_kinase 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03154 - - gmx:100805176 818.15