LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g03154	ATGCACTCGCTCTTGGCACTTAACGGGACCGTCACCACGCGTGACGGCAGATACGAGACCATCTCACGGAAGGCACGCTCCGTCAAACGAGCCTCCCACACACACCTTCTCTCAACGCCCCGTTTCTCTTTCCCTAACGTCCCCGACGACGCCGTAACGTCCTCCCTTATGGCCTCTTGCGACGACGACGACGATTTCTCTCTCCTCCGTGACGACAACCACCACCTCCACCAACCCTACGCGCCGCACCACCACTTCTCCCCCTCCGCCGTCGCCGTCGCCGTCGCCGCCCCCGTCCCGCCCAAGCCCGTCGCAGCCGACGACGCCGAGGACTACGCCAACCCCTTCGACGACGACGGCGCCAGCGAGAAGCGCAAGGACCGCGACGAGATCGGCGAGGGAGCCTCCTCGTACGGATTCAGCAAGAGATCCAAGGCTCCGCCGTCGAGCGGCAACGGCGCCGCCGAGTACCGCAAGGACCGCGAGGAGTGGAGCGACACCGCGATTGTGTGCCTCCTCGAGGCGTACACGGAGAAGTTCACGCAGCTGAATCGGGGAAACCTGAGGGGAAGGGATTGGGAGGAGGTTGCGGCGGTGGTGAGCGAACGGTGCGAGAACCAATCGAAGAGCGTGGAACAGTGTAAGAACAAGGTCGATAACCTAAAGAAGAGGTACAAATTGGAGCGACATAGAATGAGCAGTGGCTGCATTTCCACCAGTCACTGGCCTTGGTTCAAGCAATTGGAACAGATCATCGGAAATTCTCTCCCGGCGAAGTTCTCCGACGAGGATAAAGCGGTTGTTTCAGCCGGAACTTCGCCCAGGCAATCGAAGAGATATGGAGTGGCAACACCCAGCACTGGAGGTCAAGCAAATAGCATGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGAAGGGTAGTCCTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAATATTGACCCTAAGGTTTGTGGTTTGGTTATACATATGTGGCGAATTGTTGTTGGAGGTCGTAATTTCTTCTCTGGAGATGCATGGGTAACTGCGACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGACATCTTGAGAAAGGAAGGGTTGTTATATTTGGTGGCATTGGTTTTGGTTCTGGCAATCCTCTTTTCTCAACTGACATAGCTGCAGCTCTTCGTGCTTCAGAGCTTAATGCTGAAGCAGTCCTCAAGGGTACTAACGTAGATGGTGTATATGACTGCAACTCACGAGACAACAATTTCACATTTGAGCACATATCCTTCAGAGAGCTGGGTTCAAGAGGCGTCACCTCTATGGATATGTCAGCGCTAACATTCTGTGAGGAAAATGCTATTCCTGTTGTGGTTTTTAATCTACTGGAACCTGGGAACATCTCAAAAGCCTTGTGTGGAGAACAAGTTGGCACACTAATTGACCAAACTGGAGCAATAAGTTAA	1602	0.5275	MHSLLALNGTVTTRDGRYETISRKARSVKRASHTHLLSTPRFSFPNVPDDAVTSSLMASCDDDDDFSLLRDDNHHLHQPYAPHHHFSPSAVAVAVAAPVPPKPVAADDAEDYANPFDDDGASEKRKDRDEIGEGASSYGFSKRSKAPPSSGNGAAEYRKDREEWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMSSGCISTSHWPWFKQLEQIIGNSLPAKFSDEDKAVVSAGTSPRQSKRYGVATPSTGGQANSMKSKALSNLRWRRVVLKISGAALTGSDTCNIDPKVCGLVIHMWRIVVGGRNFFSGDAWVTATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSVAMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGSGNPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDNNFTFEHISFRELGSRGVTSMDMSALTFCEENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAIS	533

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pumo3g03154	533	SUPERFAMILY	Carbamate kinase-like	303	526	IPR036393	-
Pumo3g03154	533	MobiDBLite	consensus disorder prediction	274	295	-	-
Pumo3g03154	533	FunFam	Uridylate kinase isoform A	296	532	-	-
Pumo3g03154	533	Gene3D	-	164	227	-	-
Pumo3g03154	533	FunFam	Aspartate/glutamate/uridylate kinase family protein	164	227	-	-
Pumo3g03154	533	Pfam	Amino acid kinase family	306	506	IPR001048	-
Pumo3g03154	533	CDD	AAK_UMPK-PyrH-Ec	305	527	IPR015963	GO:0005737\|GO:0006221\|GO:0033862
Pumo3g03154	533	MobiDBLite	consensus disorder prediction	117	133	-	-
Pumo3g03154	533	Pfam	Myb/SANT-like DNA-binding domain	161	251	IPR044822	-
Pumo3g03154	533	Gene3D	-	299	527	IPR036393	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g03154	Pumo-Chr3	58041621	58046470	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g03154	139	255	Trihelix Transcription Factor Family	AT3G14180	36.667	1.28e-16	80.5

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Pumo3g03154		AA_kinase	7.6e-21	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g03154	-		-	gmx:100805176	818.15

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