Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03149 ATGGAAGCAGCAGCAGCAACAACACTCAACAACAACAACCACAACAACGGCAACAACACCGTTTCACCCCCACCACCACCACCACCACCCTCAGTGCCTCAGCCAATGAACATGAATGTTAACAACATGAACATGGTAAAAACCGAAGGAACAATACCAACTCCAACACCAGCACCAGCACCAACAACAATGGTTCCTCCTCCAGTGCCAGCTCCAACAACAACACCAACAACAACACCAGGGAGTTTTGATTTGTTTGGGAAGAAGAAGAGAGGGAGGCCTAGAAAGTATGATGCAGATGGGAACCTGAGAGTGAGTGCAACACCAACACCAACACCACCACCGGGTTTCACTCTGTCCACACCTTCTGTTGAGTTCTCTTCTTCTTCTTCTTCCAAAAGGGGGCGTGGCAAACACACAGCTTTTGCCAACTACCAACTCTTTTCTTCTTTTGGTGAGGTGTTTGCAAGCACAGCTGCTGGGGATTTTATACCGCATGTGGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATCATGTCATTTGCCCAGAAGGGTCCAAGAGGAATATGCATTCTCTCTGCCAATGGAGCTATCTCGAATGTCACCATACGCCAACCCGGTTCTTCTGGTGGCATATTGACTTATGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCATTCACAGTTGCTGACAACAGTGGCATGAAAAGCCGAACTGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGGGTGATAGGTGGTGGTGTTGCTGGACTTTTAACAGCTGCTGGCCCCATCCAGATTGTAGTAGGAAGCTTCATGCAAAATGGTTACAAGACCCAAAAGAGGAAGTATCAACGTGAACAACAGACAGTGGCCTCCCTTACTTCAGCTGGTCCAGAAATAGTGACAGCAGCAAGACCTATCTCACAAGCAAATGCTGATGGTGAAAGCTTTCTGATACCTATGTCTCAGATACCAGATCAAAACCAGAGAGAATCTATCAGTGTTACAAGTGATAAACAACAGAACCTAGATGCTACACCTGATGCTGCTACTTGGAATGGTTCTGAGGAATTTTCAGACCAGAGGACATCCCCGGACATCAACATATCTCTGCCAGATGAATAG 1146 0.4695 MEAAAATTLNNNNHNNGNNTVSPPPPPPPPSVPQPMNMNVNNMNMVKTEGTIPTPTPAPAPTTMVPPPVPAPTTTPTTTPGSFDLFGKKKRGRPRKYDADGNLRVSATPTPTPPPGFTLSTPSVEFSSSSSSKRGRGKHTAFANYQLFSSFGEVFASTAAGDFIPHVVTVYTGEDVAGKIMSFAQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVADNSGMKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMQNGYKTQKRKYQREQQTVASLTSAGPEIVTAARPISQANADGESFLIPMSQIPDQNQRESISVTSDKQQNLDATPDAATWNGSEEFSDQRTSPDINISLPDE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03149 381 MobiDBLite consensus disorder prediction 335 381 - -
Pumo3g03149 381 MobiDBLite consensus disorder prediction 119 136 - -
Pumo3g03149 381 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 279 IPR005175 -
Pumo3g03149 381 MobiDBLite consensus disorder prediction 36 51 - -
Pumo3g03149 381 CDD DUF296 165 278 IPR005175 -
Pumo3g03149 381 Gene3D - 165 298 - -
Pumo3g03149 381 MobiDBLite consensus disorder prediction 54 75 - -
Pumo3g03149 381 MobiDBLite consensus disorder prediction 335 375 - -
Pumo3g03149 381 MobiDBLite consensus disorder prediction 1 19 - -
Pumo3g03149 381 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 348 IPR039605 GO:0003680
Pumo3g03149 381 MobiDBLite consensus disorder prediction 20 35 - -
Pumo3g03149 381 MobiDBLite consensus disorder prediction 86 100 - -
Pumo3g03149 381 ProSiteProfiles PPC domain profile profile. 160 303 IPR005175 -
Pumo3g03149 381 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 285 - -
Pumo3g03149 381 MobiDBLite consensus disorder prediction 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03149 Pumo-Chr3 57977479 57982282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03149 88 345 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 49.446 7.68e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03149 - - gmx:100779227 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03149 3 57977479 57982282 Pumo3g03149 3 57977479 57982282 ECH