Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03144 ATGCCAACTCTCCGAAGCCGTTGGACATTCTGCAAACCAAGCCCGGTTCCGCCGTTTCTGTCCAAGACCTTCGACCTCGTCGATGACCCGACTCTCGACCCGATTATCTCGTGGGGCTCCACCGGCTTCAGCTTCGTGGTGTGGGACCCTCTGGAGTTCGCCAGAATCGTGTTGCCGCGCCATTTCAAGCACAGCAACTTCTCCAGCTTCGTTCGCCAGCTCAATACTTATGTGGGTATCATTCATTGCTCTGCTTTCATAAAGCCACTCATGCCTCCTCTTGTTTCTCACTGA 294 0.5408 MPTLRSRWTFCKPSPVPPFLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARIVLPRHFKHSNFSSFVRQLNTYVGIIHCSAFIKPLMPPLVSH 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03144 97 Gene3D - 11 89 IPR036388 -
Pumo3g03144 97 SMART hsfneu3 15 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03144 97 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03144 97 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03144 97 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03144 97 SUPERFAMILY "Winged helix" DNA-binding domain 14 78 IPR036390 -
Pumo3g03144 97 Pfam HSF-type DNA-binding 19 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo3g03144 97 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 77 IPR027725 -
Pumo3g03144 97 FunFam Heat stress transcription factor B-4 11 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03144 Pumo-Chr3 57864570 57865726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03144 14 77 HSF AT5G03720 87.500 8.75e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo3g03144 HSF_DNA-bind 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03144 K09419 - gmx:100780835 135.961