Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03141 ATGGAGAATTCGCGTAGACCGTTCGATAGATCGCGAGAACCGGGTCCGAAGAAGCCCCGGTTGATGGAAGAGCTGGATCGGGCTCCGATTTCGGGTGCCCGACAATTTCCTCAGCGACAAGCGGCTTCTGGTATTACGACGTTGTCGTCTGCAAGGTTTAGAACAAACGACAGAGACCTTGAAAGTGGTGATTTTGGTCGCCGGGGTGGTGCCGGTGGTGGTGGTTATCAGCCACAGCCACTGCCATTTCAGGAGCTTGTGAGTCAGTATAAGGCAGCGCTTGCAGAACTTACTTTCAACTCAAAACCGATTATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCGGAGAAGGCCATTGCAGCCACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTTCCAGGCTGCCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGCATGAGGCATCTTTTTGGAACTTGGAAAGGTGTCTTTCCTCCTCAGACCCTTCAGGCTATTGAGAAGGAATTGGGCTTCACTCCTGCAGTCAATGGCTCATCTTCTGCTTCTGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGACAGCGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGTTGATGATATAACTGGAGCAATTTCAAACTCAAATGATGACCCAGAGATGCCCGGTAGAACTTTGGGTGTTGCACGATCATGGGTGGATCCTAGTGTTACTGTTAACATCCATTCACGTGAAAATGATCAGCGTGCTCATAGAGATGCATTCAATGATTCTGTTCCGGAAAAGAGCATTGGTGCATCCTATGGAAGCAATGAATATGGTTCCAATCTTTCAAGGAATTTGGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACTGAGTCAGGACATGACAAAAGTTGGTACAGCAAATCTGGTGTTGTTGCAGGGACCATGCCTGGGCAAAGAAATGGTTTGAGTCTCAAGTATAGTTTTTTGAATACTGAAGCACCAAAGTCCATGATTTTGGATGCACATCATCAGCCTACACAAAACATAACTAGCACACATAGCAGTGTGATCTCAAATAGCTGGAAAAATTCTGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCCTGACTGGTCATGGTGCATCCACTGTTAGCAACTTGAGCAAAGATAGTTGGACTGCTGATGACGAGAATTTGGAAGTTGAAGATCGCCTCCAAATCAGAAATCCTTTCGGGGCAAATGCTGATAGAGAAATGTCCATTGAATCTCAAGCCACTGAAAAGAAACAATTACCTTCATCTCGGCATCATCCATCACTATCATGGCAATTGCAGGAGCAGCACTCTATTGATGAGTTGAATCGGAAGGCAGGTCACTCGGACAGATTTGTGTCCACACTTGGTGCCATACCAGCCAATACAAATTCTTCTGCTGCCAGGATGGTGAATCGGCCTTTCCTGTCAAATGCAACAATAGGATTGCCAGGAATTGCAGGACAATTTCATTCTTTGGGAGCTGAAAGCCCTTCAGGGCAGTCACCTTTGCGACAAAGGTCTCTGTCACCGCCAGTAAGTGTGCACCACTCTCATCCACTACAAAATTTGGCTGAGCAAGACCTTCCCCAGACTCATAAAGCATCTCATTTTCTGGGAGGTCTGCAGAGCCAATATATTAAAGATTCTTCACCCGCCCCTCCCCCTAATATTCAAGTTGGTAACTTACAGAGATCACAACTGAAAAACTTGCAGGGTCCATTCTCTTCAATGACTTTTCAGGCAAGGCATCAGCAGCAACTGAGCTCTTCTCACAATGAAGTTACTGTTAAGACTGAGAAGCCACCCATGTCCAAAGTTCCTTTAGCCAGAGAAACTAAAAGTAGCCTGGATACTCTTCCATCTCGGTTAGGGGTTCGGCCTTCACGGTCAGGTGGTCCTTCGCCTGCCACATTAATTTCTTCAGTGTCCACAATGGTATCACCATCTTCATTAGGTCCTTCCAGTAATAATGTATCTGTTATCCCAAAAATACCTTTAAGAAAGGCTGGACAACCACCTAGGGCATCTACTCTACCACCAGCTTCCTCTAATGTCAGCAGTGCCTCAGGCCAGACATCAAGTGATACCAATAATAACTTAAATCCAATTGCAAACCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAACAGAGTCACCAGCTAAGGTGCCTTCAGAGTTGCTTACTCGATTGGAAGAACAAAGCGATAGCATTACCACCACTAGCTCTTTGCCTGTGGCTTCAGTGTCTGGTTCTGCAGCTGTCCCAGCCCCTTCTACCAAAGATGAGGTAGACGACACTGCAAGAACGCCTATATCCTTGTCTGAATCAACCAGCCCAGCAATCAGAAATCTCATTGGCTTCGAGTTTAAGCCTGATGTAATTCGAGAATTCCATTCATCTGTAATTAGTGGATTATTTGATGATTTTCCACATCATTGCAGCATATGTGGCCTTAGGCTTAGATTCCAAGAACAGTTCAATAGTCACTTGGAGTGGCATGCCACAAGAGAAAGTGAAGAAAATGGTTTAATTAGGGCATCGAGATGGTATCTGAAGTCAAGTGACTGGATTCTTGGCAAGGCTGAATATCCATCTGAGAATGAGTTTACTGATTCTGTAGATACATATGGCAAGGAAACAGACAAAAGTCAAGAGAATGCTATGGTTCCAGCAGATGAAAACCAATGCTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATTTTTACTGTCAGGAAAATGGCGAGTGGATGTTCAAAGGGGCTGTTTACCTGGCCAACTCTGATAGCAATAGTGAGATGGGAATTAGAGATGTGAGTACTGGAAGGGGTCCTATCATTCATGCAAGTTGCCTATCAGATAACTCAATTTCCAGTGTCCTCAAGATGGTAAGGCTTATTACTTGA 3105 0.449 MENSRRPFDRSREPGPKKPRLMEELDRAPISGARQFPQRQAASGITTLSSARFRTNDRDLESGDFGRRGGAGGGGYQPQPLPFQELVSQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQAIEKELGFTPAVNGSSSASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVDDITGAISNSNDDPEMPGRTLGVARSWVDPSVTVNIHSRENDQRAHRDAFNDSVPEKSIGASYGSNEYGSNLSRNLGLGISRPGGRVTESGHDKSWYSKSGVVAGTMPGQRNGLSLKYSFLNTEAPKSMILDAHHQPTQNITSTHSSVISNSWKNSEEEEYTWDEMNSGLTGHGASTVSNLSKDSWTADDENLEVEDRLQIRNPFGANADREMSIESQATEKKQLPSSRHHPSLSWQLQEQHSIDELNRKAGHSDRFVSTLGAIPANTNSSAARMVNRPFLSNATIGLPGIAGQFHSLGAESPSGQSPLRQRSLSPPVSVHHSHPLQNLAEQDLPQTHKASHFLGGLQSQYIKDSSPAPPPNIQVGNLQRSQLKNLQGPFSSMTFQARHQQQLSSSHNEVTVKTEKPPMSKVPLARETKSSLDTLPSRLGVRPSRSGGPSPATLISSVSTMVSPSSLGPSSNNVSVIPKIPLRKAGQPPRASTLPPASSNVSSASGQTSSDTNNNLNPIANLLSSLVAKGLISAETESPAKVPSELLTRLEEQSDSITTTSSLPVASVSGSAAVPAPSTKDEVDDTARTPISLSESTSPAIRNLIGFEFKPDVIREFHSSVISGLFDDFPHHCSICGLRLRFQEQFNSHLEWHATRESEENGLIRASRWYLKSSDWILGKAEYPSENEFTDSVDTYGKETDKSQENAMVPADENQCLCVLCGELFEDFYCQENGEWMFKGAVYLANSDSNSEMGIRDVSTGRGPIIHASCLSDNSISSVLKMVRLIT 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03141 1034 CDD CID_Pcf11 87 203 IPR047415 -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 243 272 - -
Pumo3g03141 1034 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Pumo3g03141 1034 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 1024 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 1 27 - -
Pumo3g03141 1034 SMART 558neu5 85 207 IPR006569 -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 213 234 - -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 556 580 - -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 739 763 - -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 1 78 - -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 815 836 - -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 730 763 - -
Pumo3g03141 1034 ProSitePatterns Zinc finger C2H2 type domain signature. 880 900 IPR013087 -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 36 53 - -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 554 580 - -
Pumo3g03141 1034 SUPERFAMILY ENTH/VHS domain 85 210 IPR008942 -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 460 497 - -
Pumo3g03141 1034 Pfam CID domain 91 201 IPR006569 -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 648 703 - -
Pumo3g03141 1034 MobiDBLite consensus disorder prediction 213 275 - -
Pumo3g03141 1034 Gene3D - 82 207 IPR008942 -
Pumo3g03141 1034 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03141 Pumo-Chr3 57824845 57832299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03141 73 427 C2H2 Transcription Factor Family AT4G04885 38.400 6.67e-58 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03141 K14400 - gmx:100807857 1591.25