Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03137 ATGGAAGATCACCATCACCATCACCATCACCACCACCATCAGCATCATCAGAATCACTTCGGCATGAACGATCTAAGGCAAGTGGTTAATGGGCCGAGGCCGGCCCACAACACCTTCCCGGCCTCCGTGCCGCCGCACCCCACGGTGGAGCTTTTCCACGGCCACCACCACCACCGGAATCTCACTCCCTTACCCACTCATCATCCCCAACACCAACAGCAGCAACACTTCGAGGTTATGATGTTTGGTCGTGACATTATGCCACACGGCCTTCACGACTTTGCTGCTTCCACAACAACCCATGATTCTTCTGCTGCCACCATCACCCTACCCACTCCACCCGTTACTAGTAGCGGCTTTGATGCTGAGGGTGCAGGCTGCATCGGTGGAGACCCCTCCACCGGAAGATGGCCCAGACAGGAGACTCTCACTCTCCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAATCACAAAGGACCCTTATGGGATGAAGTCTCTAGGATCATGTGTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGAGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACAAAAGAAGGTAAGGCAGGAAGGCATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAACAGTAACACAGTTTCAGTCCCAGAAACCAATGCTGTTGGCAGCATTCATTTTCAAGGAAGCAGCCATGGCCCCTCCCAAACAAATCAAGACAATAACAAGTTTCAGTCTCACAATACTAAGCATTGTGATAGCCTCAGCCTCACTAACTCCACTAACTTTGACACATCAACATCTGATGATGGTGACAATGATTACAGCATGGAGAATGAGTCCATGGAGAAGAGGAAAAAGAGGAAGAGTGGGAGGAGTTGGAAGGGGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAAAGGAGTGGTTGGATAAGCTTGTGAAGACACTTGAAGAGAAGGAGAAGGAGAGAATGCTGAGAGAGGAAGAGTGGAGGAAACAAGAGGCAAACAGGTTAGAGAGGGAGCAAAAGTTTTGGGCTAAAGAGAGAGCATGGATTGAAGCTAGAGATGCTGCTTTGATGGAGGCTTTGCATAAGCTAACTGGGAGAGAAATAATGAAGGCTGAAACTCCTGAGGGTATAAATGCAATGGCAGCTGAAGTTCAAAACCACAGTGAGAACCAGAATAATGAAGATGAGAGTGAAATCTTGAACAGCAGTAATGTTATCAGAGGTGCTGATAGCTGGCAAGAATCTGAGATCACAAGGCTTCAGCAGTTGAGAGCTGAGATTGAGACAAGGTTTCCATATAGTGAAATTTCAGAAGAGGTTTCATGGGAGGTAGTAGCAACCAAAATGGCTTGTTTTGGCTATGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATGAGTAACTATCCAAGGGAGGGTGACAAGGAAGAGAATAACGAGAAGCGCAAGGAAAACTCTAGAAGCTGCTTTTACTTCAAGAACAATGAGGATCAGCAATCTTCTCTATACGATCAAGGAAGTGCCTATTGTGATGATATCAATGATCAAGGGAAAGAGATTGAGAGGCTACAAACAAATAATAATGGTTCTTCACCTTCAAAATCCAATGTTGGAAATGTTGCTCCTTCTGATAGTTGCTTTCCCTTCTTGATGAGTGTTGAGGGTGGAAACTTGTGGGAGAACTATGGCTTAAAGCTCAACAAAGAAAATCAAAACCACTGA 1809 0.4527 MEDHHHHHHHHHHQHHQNHFGMNDLRQVVNGPRPAHNTFPASVPPHPTVELFHGHHHHRNLTPLPTHHPQHQQQQHFEVMMFGRDIMPHGLHDFAASTTTHDSSAATITLPTPPVTSSGFDAEGAGCIGGDPSTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNTVSVPETNAVGSIHFQGSSHGPSQTNQDNNKFQSHNTKHCDSLSLTNSTNFDTSTSDDGDNDYSMENESMEKRKKRKSGRSWKGKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREQKFWAKERAWIEARDAALMEALHKLTGREIMKAETPEGINAMAAEVQNHSENQNNEDESEILNSSNVIRGADSWQESEITRLQQLRAEIETRFPYSEISEEVSWEVVATKMACFGYERSALMCKEKWESMSNYPREGDKEENNEKRKENSRSCFYFKNNEDQQSSLYDQGSAYCDDINDQGKEIERLQTNNNGSSPSKSNVGNVAPSDSCFPFLMSVEGGNLWENYGLKLNKENQNH 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03137 602 Gene3D - 137 199 - -
Pumo3g03137 602 Gene3D - 439 500 - -
Pumo3g03137 602 MobiDBLite consensus disorder prediction 1 20 - -
Pumo3g03137 602 MobiDBLite consensus disorder prediction 1 17 - -
Pumo3g03137 602 MobiDBLite consensus disorder prediction 240 307 - -
Pumo3g03137 602 CDD GT1 136 201 - -
Pumo3g03137 602 ProSiteProfiles Myb-like domain profile. 438 496 IPR001005 -
Pumo3g03137 602 FunFam trihelix transcription factor PTL-like 137 199 - -
Pumo3g03137 602 MobiDBLite consensus disorder prediction 26 52 - -
Pumo3g03137 602 PANTHER FI21293P1 76 565 - -
Pumo3g03137 602 Pfam Myb/SANT-like DNA-binding domain 136 222 IPR044822 -
Pumo3g03137 602 Pfam Myb/SANT-like DNA-binding domain 437 523 IPR044822 -
Pumo3g03137 602 Coils Coil 326 353 - -
Pumo3g03137 602 SMART sant 435 498 IPR001005 -
Pumo3g03137 602 SMART sant 133 196 IPR001005 -
Pumo3g03137 602 CDD GT1 439 501 - -
Pumo3g03137 602 MobiDBLite consensus disorder prediction 240 286 - -
Pumo3g03137 602 FunFam Trihelix transcription factor GT-2 439 501 - -
Pumo3g03137 602 ProSiteProfiles Myb-like domain profile. 129 194 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03137 Pumo-Chr3 57761387 57765166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03137 14 598 Trihelix Transcription Factor Family AT5G03680 43.598 7.51e-138 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pumo3g03137 Myb_DNA-bind_4 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03137 - - gsj:114381286 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03137 3 57761387 57765166 Pumo3g03137 3 57761387 57765166 ECH
Pumo5g03151 5 80321911 80325158 Pumo3g03137 3 57761387 57765166 PCT