Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03136 ATGGCTTTCCTCAGTTGCCTTCCAATTTCACTCTCAACACAAATTCTCACACACACAGACACCATGTATTCCGGCAATGCAACCAGCAGCAGCAGCAGCAGAGGCGCTTCGGGTTCCGGTAAGTACCGCGGCGTGAGGCGCAGGGCCAGCGGCAAATGGGTGTCCGAGATTCGTGAGCCTAAGAAGCCTAACAGAATTTGGCTAGGCACGTTCCCCACACCGGAAATGGCCGCGGTGGCCTACGACGTGGCAGCGTTAGCTCTGAAGGGTAGGGATGCTGAGCTCAACTTTCCTGACTCCGCTTCTTCGCTTCCCGTGCCGGCTTCGCACTCGGCGCGTGACATTCAGGTGGCGGCAGCGGCAGCTGCAGCGGCTGCTGGAGCAGCGAACGATGCTATGCGAACACAAACTGCGAATTGTAATTTTTCTGGGGCGCAAGAGAATCAAACAGGGATGAGCAACGAGTTTGTGGATGAGGATTTGATCTTTGACATGCCTAATGTTCTGGTAAACATGGCTCAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTTTGGAACCGAATAGCCCAGAAAACACCGAACAAGAGACAAGCCTGTGGAATTTCCCTTAA 618 0.5372 MAFLSCLPISLSTQILTHTDTMYSGNATSSSSSRGASGSGKYRGVRRRASGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGRDAELNFPDSASSLPVPASHSARDIQVAAAAAAAAAGAANDAMRTQTANCNFSGAQENQTGMSNEFVDEDLIFDMPNVLVNMAQGMLLSPPPFDIGLEPNSPENTEQETSLWNFP 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03136 205 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Pumo3g03136 205 PRINTS Ethylene responsive element binding protein signature 80 100 IPR001471 GO:0003700|GO:0006355
Pumo3g03136 205 Pfam AP2 domain 41 90 IPR001471 GO:0003700|GO:0006355
Pumo3g03136 205 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Pumo3g03136 205 MobiDBLite consensus disorder prediction 183 205 - -
Pumo3g03136 205 SUPERFAMILY DNA-binding domain 41 100 IPR016177 GO:0003677
Pumo3g03136 205 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Pumo3g03136 205 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Pumo3g03136 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 41 203 IPR045277 GO:0003700
Pumo3g03136 205 MobiDBLite consensus disorder prediction 24 44 - -
Pumo3g03136 205 FunFam Ethylene-responsive transcription factor 2 41 99 - -
Pumo3g03136 205 MobiDBLite consensus disorder prediction 190 205 - -
Pumo3g03136 205 MobiDBLite consensus disorder prediction 24 38 - -
Pumo3g03136 205 CDD AP2 41 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03136 Pumo-Chr3 57715269 57716609 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03136 42 205 AP2-EREBP Transcription Factor Family AT2G36450 61.850 2.21e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g03136 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03136 - - gmx:100811614 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03136 3 57715269 57716609 Pumo3g03136 3 57715269 57716609 ECH
Pumo5g03152 5 80356411 80357682 Pumo3g03136 3 57715269 57716609 PCT