Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03135 ATGCAGAAACGAAGGGCGGGGAGGAAGAAGTTCCACGAGACGCGTCACCCGGTGTACAAAGGGGTGAGGCAGAGGAACGGGAAGTGGGTGTGCGAGCTGCGACAACCTAATAGCAAAAACGCGCGCGTGTGGCTCGGAACATTTGCGCACCCCGACATGGCTGCTATAGCGTACGATGTTGCCGCTTTGGCTTTCAAAGGCGAAGATGCTTCCTTGAACTTTCCCCATGCTGCTACCTCGTTGCCGCGCCTTAACTCGCGAACGTGTTCCGTTAGGGCCATTCAGTTTGCGGCGACGCAGGCGGCCGAGAAGCACTTTTCTTGCGCTGATCAGTTTCAGCTCCAAAGGGAGGAGGGTTCAGCTGGTTCTGGAAGCTTCTCTTTGGACGAAGATTCTTCGGAGTTTTCGTCCGAAGGAGGTTCTGGAAGCTTCTTTTGGGACGAAGAGGAGGTGTTTAACATGCCGGAGTTGCTGAACAGCATGGCGGAAGCGTTGATTATCACACCGCCGGCGTTGGAAAGAGGGTTCAATTGGGTTGGTGGGGAAACGACTGTGGATTTGACTCTCTGGTGA 573 0.548 MQKRRAGRKKFHETRHPVYKGVRQRNGKWVCELRQPNSKNARVWLGTFAHPDMAAIAYDVAALAFKGEDASLNFPHAATSLPRLNSRTCSVRAIQFAATQAAEKHFSCADQFQLQREEGSAGSGSFSLDEDSSEFSSEGGSGSFFWDEEEVFNMPELLNSMAEALIITPPALERGFNWVGGETTVDLTLW 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03135 190 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Pumo3g03135 190 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Pumo3g03135 190 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Pumo3g03135 190 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Pumo3g03135 190 MobiDBLite consensus disorder prediction 120 140 - -
Pumo3g03135 190 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Pumo3g03135 190 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Pumo3g03135 190 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 2 190 IPR045277 GO:0003700
Pumo3g03135 190 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Pumo3g03135 190 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03135 Pumo-Chr3 57675703 57676354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03135 3 190 AP2-EREBP Transcription Factor Family AT4G25490 43.455 2.13e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pumo3g03135 AP2 3.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03135 - - gmx:100778541 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03135 3 57675703 57676354 Pumo3g03135 3 57675703 57676354 ECH
Pumo3g03135 3 57675703 57676354 Pumo5g03152 5 80356411 80357682 PCT