Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03133 ATGGACTTGCAGTTGAAGCAATGGAGAAACCAGCATGAGTCAGAGCAAGAACATTCCCCAAACATGCCAAAATTTCTCCTTCCACACCCACCACCATCTCCCTCTGCACTCCCTCTCTTTGTACCTGAACAACCCAACACCAAAGTCAGCACCCTGTCAGCATTTTCTGATTCCACATTTTCTTCTGCTCCCAGATTCCCCAGGATGGAGAGTTGCTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGGCTCTGATATTCAGGTACATGCTGGCAGGGACTCCTGTTCCTACTGAGCTCCTTCAACCAATCAAGAAAAGCTTCCTTCATTCCCCTCCCTGTTTCCTTCAACACTATCACCCTCCTTTGTTGGAATCAGGGTACTTCTGGGGCAGAGCAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGGACCGACGGCAAGAAGTGGCGGTGCTCGAGGGACACGGTGGCGGGTCAGAAGTACTGCGAGCGCCACATGCACCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAACAACAACGTGATGGATCTCTTACTGCTATAGGCATAGCCTCTGTTTCTTCTTCACCCTCTGCTTCATTCAAGTCCCCTTTTGATCTTCTTCGCCTCAATGAAAGTTCCTCTGGGGCCAAGAGTGACAGCAAGGGCTTGTTTGAGAACCATGATCATGTGGATGGGGATGGCAGATCTGATGGCCATGTCCTGAGGCATTTCTTTGATGATTGGCCAAGGACACTGCAAGAGCATGACAATGGTGAAAGCAATGGAAGCCAGAACAACAACAACAACAACTCAGGAGGAACATGTCTTTCTATGTCAACACCAGGAATCACTTCCTCGGATGTGTCACTGAAATTGTCCACTGGTCATGGAGAGGACACGTGCAGCCACGTGGCTTCAATGGGAGGACCACTTGCAGAGGCATTGAGGTCATCATCCACCAGCTCCACTTCTTCACCAACCAGTGTTCTGCTTCAGTTGCCTCCTAGTTCTGCTTGTGAGACCAGCTTCATTAGCACCTAA 1050 0.5086 MDLQLKQWRNQHESEQEHSPNMPKFLLPHPPPSPSALPLFVPEQPNTKVSTLSAFSDSTFSSAPRFPRMESCFSFAQWQELELQALIFRYMLAGTPVPTELLQPIKKSFLHSPPCFLQHYHPPLLESGYFWGRAAMDPEPGRCRRTDGKKWRCSRDTVAGQKYCERHMHRGRNRSRKPVEQQRDGSLTAIGIASVSSSPSASFKSPFDLLRLNESSSGAKSDSKGLFENHDHVDGDGRSDGHVLRHFFDDWPRTLQEHDNGESNGSQNNNNNNSGGTCLSMSTPGITSSDVSLKLSTGHGEDTCSHVASMGGPLAEALRSSSTSSTSSPTSVLLQLPPSSACETSFIST 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03133 349 MobiDBLite consensus disorder prediction 316 335 - -
Pumo3g03133 349 MobiDBLite consensus disorder prediction 254 278 - -
Pumo3g03133 349 MobiDBLite consensus disorder prediction 1 19 - -
Pumo3g03133 349 ProSiteProfiles WRC domain profile. 137 181 IPR014977 -
Pumo3g03133 349 MobiDBLite consensus disorder prediction 1 31 - -
Pumo3g03133 349 Pfam QLQ 73 105 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo3g03133 349 MobiDBLite consensus disorder prediction 258 278 - -
Pumo3g03133 349 MobiDBLite consensus disorder prediction 224 238 - -
Pumo3g03133 349 MobiDBLite consensus disorder prediction 218 238 - -
Pumo3g03133 349 Pfam WRC 138 180 IPR014977 -
Pumo3g03133 349 PANTHER GROWTH-REGULATING FACTOR 5 46 290 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pumo3g03133 349 SMART QLQ_2 71 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo3g03133 349 ProSiteProfiles QLQ domain profile. 72 107 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03133 Pumo-Chr3 57602565 57605519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03133 1 340 GRF Transcription Factor Family AT3G52910 44.020 2.11e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pumo3g03133 WRC 6.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03133 - - gmx:100817197 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03133 3 57602565 57605519 Pumo3g03133 3 57602565 57605519 ECH
Pumo5g03156 5 80466815 80469974 Pumo3g03133 3 57602565 57605519 PCT