Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03085 ATGTCACTCTCATCCATTTTTCTAAACCCACCCCCACCCTCTCTCCTCCACTTCCACTCCCCCAACCGCCACAACCTCCACCCGCCAAAACCCCTATCCCTCCAAATCCACGCCAAAACCAACCACACCCTCCAATTCCTCAAACCCTACCTCCTCTCCCAACACAAACCCATCCTCTGCGGCTGGCTCTGCAGCGCCGTCTCCGTCTATTCCCTCTCCGCCCTCCTCTCCAAACTTCCCAAAATCGACACCGTCAGCACCGCCGCCGACGCCGCCCCCCTCGCCGCGTTCCTCGTCGCGCGCCTCGCCGCCAGCTACGCGCAGCACGCGCTCCTCTGGGAGGCCGCGCTCAACGCCGTCTACAACCTCCGCCTCCACGTCTTCGACCGCGTCCTCCACCGGGAGCTTGCGTTCTTCGAAGGCAACCGCGGCGCGTCCGCCGGTGACGTGGCGTACCGAATCACCGCCGAAGCCTCCGACCTCGCCGTTACCTTGTACACTCTTCTGAACACCATAGTACCAAGTACTCTGCAGTTGTCGGCAATGTTGATGCAGATGTTAGTCATAAGTCCTACCCTTTCTTTGATTTCAGCCATGATTGTTCCTTGCATGGTGCTAGTTGTTACCTTTCTTGGTCAAGAACTTCGCAAGATATCCAAAGAGGCACATGTTAGCATTGCTGCTCTCTCAGCTTATCTAAATGAGGTGCTTCCTGCAATTCTCTTTGTGAAAGCAAACAATGCAGAGTCGTGTGAGAATACCAGGTTTAAGAGACTGGCTCTAATGGACTATACTGCAAGGCTGAAGAAAAAAAAGATGAAAGCATTGATTCCTCAGATTATACAAGCTATTTATTTTGGAGTCCTTTCCATACTTTGCGCTGGTTCGCTGATGATTTCAAGAGGTTCATTAGATCGCTATAGCTTGGTTTCATTCGTGACATCGTTGCTTTTCTTGATTCAGCCAATCCAGGATGTAGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCTGCTGAACGCTTGCTTGCCATGACCAGGTTCAAAAATAAGGTGGTTGAGAAACCAGATGCTGCTGATTTGGACTGTGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTGGGTATAATGATGAGATGCCACTTGTTTTAAACGGATTAAATCTTCACATAAGAACTGGAGAGATAGTTGCTATTGTGGGTCCTTCTGGTGGAGGGAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTGGTTGTATACTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTTTGAGAAGTCATGTTGGTGTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAGGGTGAAGCATGCAGCTCAAACTGCTCATGTAGATGAGTTTATTAGAAAACTTCCAGAAGGATACAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACTTCGTCCTTGGATAGTAAATCTGAGTTATTAGTGAGACAAGCCTGTAGAGCGTTTGATGCAAAATCGCACAGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAA 1722 0.4762 MSLSSIFLNPPPPSLLHFHSPNRHNLHPPKPLSLQIHAKTNHTLQFLKPYLLSQHKPILCGWLCSAVSVYSLSALLSKLPKIDTVSTAADAAPLAAFLVARLAASYAQHALLWEAALNAVYNLRLHVFDRVLHRELAFFEGNRGASAGDVAYRITAEASDLAVTLYTLLNTIVPSTLQLSAMLMQMLVISPTLSLISAMIVPCMVLVVTFLGQELRKISKEAHVSIAALSAYLNEVLPAILFVKANNAESCENTRFKRLALMDYTARLKKKKMKALIPQIIQAIYFGVLSILCAGSLMISRGSLDRYSLVSFVTSLLFLIQPIQDVGKAYNEWRQGEPAAERLLAMTRFKNKVVEKPDAADLDCVTGDLKFCDVSFGYNDEMPLVLNGLNLHIRTGEIVAIVGPSGGGKTTLVKLLLRLYDPISGCILIDNHNIQNIRLASLRSHVGVVSQDITLFSGTVAENIGYRDLTTKIDMERVKHAAQTAHVDEFIRKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSSLDSKSELLVRQACRAFDAKSHSACDFPSLGNSYDG 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03085 573 CDD ABC_6TM_exporters 97 343 - -
Pumo3g03085 573 SUPERFAMILY ABC transporter transmembrane region 47 347 IPR036640 GO:0005524|GO:0016020
Pumo3g03085 573 Gene3D ABC transporter type 1, transmembrane domain 42 348 IPR036640 GO:0005524|GO:0016020
Pumo3g03085 573 FunFam ABC transporter related 45 349 - -
Pumo3g03085 573 ProSitePatterns ABC transporters family signature. 509 523 IPR017871 GO:0005524|GO:0016887
Pumo3g03085 573 SMART AAA_5 395 569 IPR003593 GO:0016887
Pumo3g03085 573 Pfam ABC transporter transmembrane region 88 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g03085 573 Gene3D - 361 562 IPR027417 -
Pumo3g03085 573 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 94 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo3g03085 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 553 IPR027417 -
Pumo3g03085 573 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 369 569 IPR003439 GO:0005524
Pumo3g03085 573 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 91 552 IPR039421 -
Pumo3g03085 573 Pfam ABC transporter 386 537 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03085 Pumo-Chr3 55923905 55938184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03085 97 554 Calmodulin-binding Proteins AT2G36910 28.958 2.06e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03085 K02021 - gmx:100788075 922.924