Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03080 ATGCTGGGGAAGAAGATGGTATCATTGAAGAAACTAGCCAAAAGGGTGAAGGGTGTTGGAGGAGCTGACTCTGACCCTCCCTACCATGAATGTTTGCTAAAGGGGTATGAGGAAGATCAAGAATCAGCCTCTAGCACAACCCCAACTGGGTTTTTTGCACTTTATGTTGGTGAGGAGCGTCAGAGATATGTGGTCCCAACCAGCTACCTTTCTCACCCTCTATTCAAGATGCTGCTGGAGAAGGCCTACAATGAATTTGGCTTTGCACAGAGGAATGGCCTTGTGGTGCCATGTAGTGTTTCCACATTTCAGGAGGTGGTGAACGCTATTGAATGCAACAATGGCAAGTTTGACTTGGGCAAGATTTTTGAAGATTTTGCTTAG 384 0.4609 MLGKKMVSLKKLAKRVKGVGGADSDPPYHECLLKGYEEDQESASSTTPTGFFALYVGEERQRYVVPTSYLSHPLFKMLLEKAYNEFGFAQRNGLVVPCSVSTFQEVVNAIECNNGKFDLGKIFEDFA 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03080 127 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 40 106 IPR003676 GO:0009733
Pumo3g03080 127 Pfam Auxin responsive protein 27 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03080 Pumo-Chr3 55876425 55877312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03080 3 113 Calmodulin-binding Proteins AT5G20810 41.739 1.98e-21 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03080 K14488 - gmx:100790208 246.899