Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03065 ATGTCCATAAACCACTACTCCATGGACCTTCCAGAACCAACACTGTGGTGGCCACAACAACAACAACAACAACAGCCAATCTTAATGGAACCAACCCCAAACAACCCCTCCACTTCCAGCTGGCCCCCTCCAGACCCTCTCCGTCTCAACCTCAACAACGATGACGACGACGATAACGAAGAATACCAAACGACAGCCACAACCACAGCTCAGCAAGAAGAAGAAGAAATAGATCATAAAGAACCGATGTTCGAGAAGCCGCTAACCCCGAGCGACGTCGGGAAGCTGAACCGCCTCGTAATCCCGAAGCAGCACGCCGAGAAGTACTTCCCACTGAGTGGCGGCGGCGGCGGTGGCGGTGGCGACTCGGGCAGCGAGTGCAAGGGGCTTCTACTGAGTTTCGAGGACGAGTCGGGGAAGTGCTGGCGGTTCCGCTATTCCTACTGGAACAGCAGCCAGAGTTATGTTCTCACCAAGGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTTTGTTCGAGCGCCACCGCGCCGACGCGCAGCGCCTCTTCATCGGGTGGAGGCGCAGGCGACAGAGCGACGCACTCCCGGCGCACGTTAGCAGGGCGGCGGTGGGGCACGGGAAGAGTGGCGATGGTGGTGGGAATAGTAATAATAAGAATGAGGTAGTAGTTAGTGGTGGTGGTGGTGGTGGAGTGGGCGTGGGTTGGACCAGAGGGTTCTATCCTACGCATCCTTATCCTACGCATCATCAGCATCAGCCCTTGCCATACCAACAACATGACTGTCTTCATGCAGGTCTCTCCAACTCTTCAATACCATATAAATAA 846 0.5626 MSINHYSMDLPEPTLWWPQQQQQQQPILMEPTPNNPSTSSWPPPDPLRLNLNNDDDDDNEEYQTTATTTAQQEEEEIDHKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGGGGDSGSECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADAQRLFIGWRRRRQSDALPAHVSRAAVGHGKSGDGGGNSNNKNEVVVSGGGGGGVGVGWTRGFYPTHPYPTHHQHQPLPYQQHDCLHAGLSNSSIPYK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03065 281 CDD B3_DNA 82 186 IPR003340 GO:0003677
Pumo3g03065 281 SMART B3_2 84 196 IPR003340 GO:0003677
Pumo3g03065 281 MobiDBLite consensus disorder prediction 1 91 - -
Pumo3g03065 281 SUPERFAMILY DNA-binding pseudobarrel domain 79 197 IPR015300 -
Pumo3g03065 281 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 206 IPR044800 GO:0003700
Pumo3g03065 281 MobiDBLite consensus disorder prediction 206 230 - -
Pumo3g03065 281 Gene3D - 77 205 IPR015300 -
Pumo3g03065 281 ProSiteProfiles B3 DNA-binding domain profile. 84 196 IPR003340 GO:0003677
Pumo3g03065 281 MobiDBLite consensus disorder prediction 14 35 - -
Pumo3g03065 281 Pfam B3 DNA binding domain 84 195 IPR003340 GO:0003677
Pumo3g03065 281 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03065 Pumo-Chr3 55650339 55651472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03065 59 195 RAV Transcription Factor Family AT3G11580 69.784 2.98e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo3g03065 B3 3.5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03065 K09287 - gmx:100818164 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03065 3 55650339 55651472 Pumo3g03065 3 55650339 55651472 ECH
Pumo5g03225 5 81226187 81227576 Pumo3g03065 3 55650339 55651472 PCT