Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03062 ATGGGGCGTGTTCGCACGAAGACGGTGAAGAAGTCATCACGTCAAGTGATCGAGAGGTCCTGGAGGAGGTGGCCATCATTCCCTTCCAAGAGGCTCCGCAACAAGATCGCGGGGTTCTCCACCCACCTCATGAAGCGCATCCAGAAGGGTCCCGTGAGGGGCATCTCGCTCAAGCTGCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTCCCCGACGTCTCCGCCATCAGAACCGACCAGATCGAGGTCGACAAGGAGACTCTCGACATGCTTGCTGCTCTCGGAATGTCTGAGATTCCTGGTGTTGTTCAGGTGGATCCTGTTGCCGTCCAGGCGCCAATTGGCTTCGGCCGCGGCGCCGCCGGCGCGGGAAGGAGTTGCCTATCTGAGCCTGTAGTAGTCAGATTTGGATTCTCATGGCATGATCACCTGACGGCTTGGATGAGGAGACGGTCTAAAAAAGGGTTTGAAATGTCTTAG 483 0.5797 MGRVRTKTVKKSSRQVIERSWRRWPSFPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDQIEVDKETLDMLAALGMSEIPGVVQVDPVAVQAPIGFGRGAAGAGRSCLSEPVVVRFGFSWHDHLTAWMRRRSKKGFEMS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03062 160 Gene3D - 23 48 IPR036401 GO:0003735|GO:0005840|GO:0006412
Pumo3g03062 160 SUPERFAMILY Rps17e-like 1 48 IPR036401 GO:0003735|GO:0005840|GO:0006412
Pumo3g03062 160 Pfam Ribosomal S17 1 22 IPR001210 GO:0003735|GO:0005840|GO:0006412
Pumo3g03062 160 Pfam Ribosomal S17 27 106 IPR001210 GO:0003735|GO:0005840|GO:0006412
Pumo3g03062 160 PANTHER 40S RIBOSOMAL PROTEIN S17 1 108 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03062 Pumo-Chr3 55610452 55611680 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03062 1 122 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 69.343 3.30e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03062 K02962 - gmx:100819067 197.208