Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03044 ATGTCCAGCGCCGCCGGAGCTCCCGACCGCCGCCCCTCGCCGCCGCTGGGGGCTGCCGGCTCCCCCGCCCGCCCGCCGCTCAAGCGCCACCTCGCCTTCGTCACCAAACCGCCCTTCGCCCCGCCCGACGAGTACCACAGCTTCTCCAGTACCGACTCCCGCCGCCTCGCCGATGAAGCCGTCGTCGTTAGATCTCCGTACATGAAGCGGAAGAGTGGAATGAATGACAGTGAAGGAGAGTCACAAGCACAAAAGTGGAGTAATAGCCCTGTATACACTAATGTTAGTAATGTAACGAGTAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGGGGGAAGGTCACAGAAGGCAAAGGCTTCCAAAGAAGGCAGGTCATGTCCTCCGACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTAACAGCTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAGCATGCAGAAGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACGTCTGGTGAGGTGGATGGTGATATCTCTGTGCTTAAGGCAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAATTTAAGTGAAAATGAAAACAACCAGAAGTGCCTTTTCGTGACTGAAGAAGATATTAAGGGCGTACCTTGCTTCCAGAATGAAACTCTAATAGCAATTAAAGCTCCGCATGGGACCACCCTGGAAGTCCCTGATCCCGAGGAAGCTGTAGACTATCCACAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGGTTAATGGTGCTGAGCTCCCCACGATCCCACTTGCTTCCAGTTCTGGGTCCAATGAGCAACTAATGACAGAAATGGTTCCTGCTGAATGCAGCGGAAAAGAACTTGAACCTCAAACTCAGCTCTCTTCTCATGCATTCTCTGATCTAAATGCTTCTCAAGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATAATGATGCAGATTATTGGCTTCTATCAGAGGCTGACGTTAGTATAACAGATATATGGAGAACAGATTGTATCCTTTTTGAATACTTTTGTGCCTTTATGCTTTCTCTCCCATTTCTGTCTTATGTCTTATTTGAAGTACTATACGTACGTAATTCCTTAATTCACAACAAAACAGCTAGTGTTGATTGGAATGGGGTAGACATGCTTCATCCCGATTTTGGAATCATTTCGAGGCCTCAAACTCCGTCATCCGGGTTTGCTGAAGCGCCATCAACAGGAGCAAACTCAATTCAGAAGTGA 1512 0.4616 MSSAAGAPDRRPSPPLGAAGSPARPPLKRHLAFVTKPPFAPPDEYHSFSSTDSRRLADEAVVVRSPYMKRKSGMNDSEGESQAQKWSNSPVYTNVSNVTSSPFKTPVSAKGGRSQKAKASKEGRSCPPTPISNAGSPSPLTPANSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKAEVEKLSLEEQGLDDQIREMQERLRNLSENENNQKCLFVTEEDIKGVPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEVNGAELPTIPLASSSGSNEQLMTEMVPAECSGKELEPQTQLSSHAFSDLNASQEFAGGMMKIVPSDVDNDADYWLLSEADVSITDIWRTDCILFEYFCAFMLSLPFLSYVLFEVLYVRNSLIHNKTASVDWNGVDMLHPDFGIISRPQTPSSGFAEAPSTGANSIQK 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03044 503 MobiDBLite consensus disorder prediction 484 503 - -
Pumo3g03044 503 MobiDBLite consensus disorder prediction 77 108 - -
Pumo3g03044 503 Gene3D - 141 214 IPR036388 -
Pumo3g03044 503 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Pumo3g03044 503 MobiDBLite consensus disorder prediction 126 142 - -
Pumo3g03044 503 Coils Coil 225 266 - -
Pumo3g03044 503 MobiDBLite consensus disorder prediction 1 142 - -
Pumo3g03044 503 CDD E2F_DD 225 329 IPR032198 GO:0046983
Pumo3g03044 503 Gene3D - 219 329 - -
Pumo3g03044 503 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Pumo3g03044 503 PANTHER TRANSCRIPTION FACTOR E2F 70 429 IPR015633 GO:0000978|GO:0006357
Pumo3g03044 503 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Pumo3g03044 503 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Pumo3g03044 503 FunFam E2F transcription factor 1 141 214 - -
Pumo3g03044 503 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03044 Pumo-Chr3 55373515 55378563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03044 21 441 E2F-DP Transcription Factor Family AT2G36010 56.858 1.55e-158 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pumo3g03044 E2F_CC-MB 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03044 K06620 - gmx:100811762 855.129