Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03038 ATGAGAACAGGAAGCTGCGCCGTGCAACAGGGTCTAACCCCGGAGGCAGCAAGCATAGTGAAGCAAGCAGTGACACTCGCGAAGCGTCGCGGCCACGCGCAAGTGACACCTCTCCACGTGGCCAGCACGATGCTCTCCATCACCAACGGGCTTCTGAGAACCGCGTGTCTCCAATCCCACTCCCACCCTCTTCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTGGCTCTGAATCGCTTACCAGCTTCAACTTCTTCGAGCCCCATGTTGCAGGATTCTCACCACCACCACTCTCACGCGTGTCCTTCTATCTCAAACGCTTTGGTTGCGGCCTTCAAGCGCGCCCAAGCACACCAGCGACGTGGATCCATTGAGAATCAGCAGCAACCTCTCTTGGCAGTGAAGATAGAGCTCGAGCAACTCATTATTTCGATCTTGGATGACCCTAGTGTTAGCAGAGTCATGAGGGAAGCTGGGTTCTCTAGCACCCAAGTGAAAAGCAACGTTGAACAAGCTGTGTCTTTGGAAATATGCTCTCAGAATAATGGTAGTGGTAACAACAACAACAATGGTAATAATAATAAGGTGAAGGAAAACAATAGTAGTGGAGAGAAAGGGTTGGTGTTGGATCCCATTAGGGGTGAGGATGTTGCTAGTGTGATTGACAACTTGGGGAGTGAGAGAAAGAGAAGTGTTGTGATTGTGGGGGAGTGTGTTACTAGTCTTGAGGGTGTAGTTAGGGGAGTGATGGAAAAGGTCGATAAAGGGGATGTTGGTGAGTGTCTTATGGGTGTCAAGTTTATCTCTCTTTCTCTTTCTTCTTTTGGGAATGTTTCAAGGGTGGAGGTGGAGCAAAAGGTTGAGGAGATTAGGAGTCTTGTGAAGGCAAGTGAGCATAGCAAAGGGTATGTTTTGTATTTGGGAGATCTCAAATGGGTGTTTGATTATAGGGCTCGTGGATCACAATCAGGGAGAGGGTGTTATTGCCCTGTGGATCACATGGTGATGGAGATTGGGAAGCTTGTGAATGGGGTTGAAGAGAATAATGGTGGAAGGTTTTGGGTTATGGGTGTTGCCACTTTTCAAGCTTACATGAGATGCAAAAATGGCCAACCATCTTTGGAGACTCTTTGGGGTCTTCATCCTATCACTATTCCTGCTGGAAGCTTGCGCTTGAGTCTCATCACTGACAGTGGTCTACAAAACCAATCCACAAACAAGAAAGCTGACAACAGAACTAGCTGGCTCTTACTTGAAGGAGTGGGGGATGATAATAATCAGAAACAACAAGCTTGCTTCGCGGAACCTTCCACCAAGAATGAGACCGAAGTTCGAAGCTTGCAAAGCAGTAGTACTTGTAACAGTGACTCCTCAAGTTCAACCCTTCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAGTCACCTATAATGATCAGAACTGTGTCCCAGTGAGAGAGCTTTGCAACAAGTGGAACTCTATGTGTAGTTCAATCCAACAAAAGCAACCTTATCCTTCAGACAAAACCCACACATTATCCTCGGTGTCACCTTCTTCATCAACCTCAAACTTCTCATACGAACAGCAACATCCTAATTTGCACCAAACCCATCACGAGTCATTGAACAACCACAATTTCTGGATCTCCAACAATGGTTGCAACAACCCCAATGAACCCACTTTGAGAGTGTACATTCCAGAGAACAATAATAAGGACACTACTATGCAACCATTCTCTTCACCAAACCCAAGTTCCAACCCTAATTCCGCTTCTTCCAGTGACATCATGGAAGTGGAGCATGTGAACAATTTCAAAGAGCTAAACTCGGAGAACCTGAAAACACTGTGCAATGCTTTGGAGAAAAAAGTGCCGTGGCAGAAGGAGATCATACCCGAAATCGCGAGCACCGTTTTGCAATGCCGTTCTGGCATGGTGAGAAGAAAAGGGAAAGTGCGAAACGGTGAAGAAGTGAAAGAAGAAACGTGGTTGTTCTTCCAAGGTGTTGATGTTGAAGCCAAAGAGAAAATAGCAAGAGAACTCGCTCGGCTTTGTTTCGGGTCCCAAAACGACGTTGTTTCGATAGCACTCAGCACTTTTGCATCAACAAGAGCAGATTCAACTGAGGATTATAGCAGGAACAAAAGATCAAGAGAAGAAACAAGTTGCAGTTACATTGAGAGGTTTGCAGAAGCTATAACCACTAACCCTCATAGAGTGTTTCTTGTTGAAGACATAGAGCAAGCAGATTATTGTTCTCAACTTGGTTTCAAAAGGGCCATCGAGAGAGGAAGAGTTGCGGATTCAAACGGTGAAGAGGTTGCACTTTGTAATGCCATCATCATTCTGAGCTGTGAAAGTTTCGGTTCAAGGTCAAGGATTTGTTCTCCCTCGGTCAAACAAAAATCGTTGACTGAGAAAGAACAAAATGGTAACCTTGCTACTTTGGAGGAGACAAGCCCTTGTGTAATTTCTTTAGATTTGAATATTTCCATTGATGATGAAAACGAGGTTGAGGATAGGTCAGTGGATGAAATTGGGCTTCTTGAATCCGTAGACAGAAAGGTTATCTTCAACTTTCAGGAATTGTGA 2595 0.4532 MRTGSCAVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVASTMLSITNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSSPMLQDSHHHHSHACPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQNNGSGNNNNNGNNNKVKENNSSGEKGLVLDPIRGEDVASVIDNLGSERKRSVVIVGECVTSLEGVVRGVMEKVDKGDVGECLMGVKFISLSLSSFGNVSRVEVEQKVEEIRSLVKASEHSKGYVLYLGDLKWVFDYRARGSQSGRGCYCPVDHMVMEIGKLVNGVEENNGGRFWVMGVATFQAYMRCKNGQPSLETLWGLHPITIPAGSLRLSLITDSGLQNQSTNKKADNRTSWLLLEGVGDDNNQKQQACFAEPSTKNETEVRSLQSSSTCNSDSSSSTLPAWLQQYKNENKGVTYNDQNCVPVRELCNKWNSMCSSIQQKQPYPSDKTHTLSSVSPSSSTSNFSYEQQHPNLHQTHHESLNNHNFWISNNGCNNPNEPTLRVYIPENNNKDTTMQPFSSPNPSSNPNSASSSDIMEVEHVNNFKELNSENLKTLCNALEKKVPWQKEIIPEIASTVLQCRSGMVRRKGKVRNGEEVKEETWLFFQGVDVEAKEKIARELARLCFGSQNDVVSIALSTFASTRADSTEDYSRNKRSREETSCSYIERFAEAITTNPHRVFLVEDIEQADYCSQLGFKRAIERGRVADSNGEEVALCNAIIILSCESFGSRSRICSPSVKQKSLTEKEQNGNLATLEETSPCVISLDLNISIDDENEVEDRSVDEIGLLESVDRKVIFNFQEL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03038 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 604 788 IPR027417 -
Pumo3g03038 864 Gene3D - 9 174 IPR036628 -
Pumo3g03038 864 Gene3D - 592 826 IPR027417 -
Pumo3g03038 864 MobiDBLite consensus disorder prediction 560 595 - -
Pumo3g03038 864 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Pumo3g03038 864 MobiDBLite consensus disorder prediction 180 201 - -
Pumo3g03038 864 MobiDBLite consensus disorder prediction 502 528 - -
Pumo3g03038 864 Pfam Clp amino terminal domain, pathogenicity island component 23 53 IPR004176 -
Pumo3g03038 864 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Pumo3g03038 864 MobiDBLite consensus disorder prediction 180 208 - -
Pumo3g03038 864 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Pumo3g03038 864 Gene3D - 208 382 IPR027417 -
Pumo3g03038 864 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03038 Pumo-Chr3 55134718 55139571 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03038 - - var:108320189 1447.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03038 3 55134718 55139571 Pumo1g00264 1 4228464 4233634 ECH
Pumo3g03038 3 55134718 55139571 Pumo3g03038 3 55134718 55139571 ECH
Pumo3g03038 3 55134718 55139571 Pumo1g00639 1 9685657 9687012 ECH
Pumo3g03038 3 55134718 55139571 Pumo9g01553 9 43619834 43621156 ECH
Pumo3g03038 3 55134718 55139571 Pumo9g02110 9 52335416 52341319 ECH