Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03024 ATGGTGACTGGCAGTGGGTCTAGGACTATGACTGGAAATGGCGAGTCTCGTGTCATTGAAGCTGGGAACCTTGTGATATCGGTTCAGGTTCTTCGAAATGTGACCAAGAATTTTGCGCGGGAGAATGAGGTTGGACGCGGTGGATTTGGGGTTGTTTACAAGGGAGAATTGGATGATGGGACTAAGATTGCGGTAAAACGAATGGAGTCTGGTGTGATTACCAGCAAGGCATTGGATGAGTTCCAGTCTGAGATTGCAGTTCTATCGAAAGTCCGGCACCGGCATTTGGTGTCTCTTTTGGGTTATTCAGTTGAAGGTAATGAGAGGATCCTAGTTTATGAGTATATGCCACAAGGGGCTCTCAGTATGCATCTTTTCCATTGGAAGAGCTTACAACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGTCTGGCTCATCAGATCTTCATTCACAGAGATCTTAAGTCATCAAATATTTTGCTTGGGGATGACTTTAGAGCAAAAGTCTCGGATTTTGGATTGGTAAAACTTGCTCCTGATGGCAAAAAATCTGTAGTGACCCGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACAGGAAAAGTCACTACCAAAGCAGATGTTTTCAGTTTTGGAGTTGTGCTAATGGAGTTGTTAACTGGACTAATGGCACTTGATGAGGATAGACCTGAGGAAACCCAATACTTGGCATCATGGTTCTGGCATATAAAATCAGACAAGGAGAAACTAATGGCTGCTATTGACCCGGCCCTCGACATAAAGGAAGAAATGTTCGATATTGTCTCTATCATTGCCGAGTTAGCTGGGCACTGCACTGCTAGAGAACCAAACCAAAGGCCAGATATGGGTCATGCTGTGAATGTTCTTGCACCGCTTGTTCAAAAATGGAAACCATTCGATGATGACACTGAGGAGTATTCTGGCATAGATTATAGTCTTCCCCTTAACCAAATGGTGAAGGATTGGCAGGAGACAGAAGGAAAGGACTTGAGCTATGTGGACCTACAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGGTTTGCTGAGTCCTTTACATCGGTCGATGGCCGATGA 1155 0.4502 MVTGSGSRTMTGNGESRVIEAGNLVISVQVLRNVTKNFARENEVGRGGFGVVYKGELDDGTKIAVKRMESGVITSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSMHLFHWKSLQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEETQYLASWFWHIKSDKEKLMAAIDPALDIKEEMFDIVSIIAELAGHCTAREPNQRPDMGHAVNVLAPLVQKWKPFDDDTEEYSGIDYSLPLNQMVKDWQETEGKDLSYVDLQDSKSSIPARPTGFAESFTSVDGR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03024 384 CDD STKc_IRAK 44 317 - -
Pumo3g03024 384 Gene3D Transferase(Phosphotransferase) domain 1 116 335 - -
Pumo3g03024 384 FunFam receptor protein kinase TMK1 116 333 - -
Pumo3g03024 384 Gene3D Phosphorylase Kinase; domain 1 5 115 - -
Pumo3g03024 384 Pfam Protein tyrosine and serine/threonine kinase 41 312 IPR001245 GO:0004672|GO:0006468
Pumo3g03024 384 SMART serkin_6 38 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g03024 384 PANTHER OSJNBA0070M12.3 PROTEIN 7 384 - -
Pumo3g03024 384 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Pumo3g03024 384 SUPERFAMILY Protein kinase-like (PK-like) 19 322 IPR011009 -
Pumo3g03024 384 FunFam receptor protein kinase TMK1 2 115 - -
Pumo3g03024 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Pumo3g03024 384 ProSiteProfiles Protein kinase domain profile. 38 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g03024 384 MobiDBLite consensus disorder prediction 364 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03024 Pumo-Chr3 54747889 54749998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03024 18 322 Receptor kinase-like Gene Family AT3G58690 42.208 5.48e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pumo3g03024 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03024 - - gmx:100781857 737.258