Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03014 ATGGCGACATATTTTCATAGTAACTCCGAAATTCAAGCCGGTGCCGACGGCCTCCAAACTCTCGTACTAATGAACCCCGGCTACGTCCAATACTCCGACACGCCGCCGCCACACGGCGGCGGAAACCTCGTATTCCTCAACTCCGCCGCCGGCAACGCCTCCCTGCAAAGCCTCCCCCACGCGCCGCCCCCTCACACGCAGCAATTCGTCGGCGTGCCGCTCTCGGCTGCCGGGCAGGAGCCGCCGCCGCAGCAGCCGTCCATGCACCACGACGTCTCCGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAACCTCTGGAACACGATTGACCCCAACGCGGCGGCGCGTGAGGCCCCACGCGCCACCCAGGGGCTCTCGCTGAGCCTGCACGGCGAGGACGTGCGCGCGTCGTCGTCCTCGGCCTCCAGGGCGTCCAACGGCGGCGGCGTGGCGGGGATTCAGAGCGTGCTGTTGAGTTCCAAGTACTTGAAAGCCACGCAGGAGCTTCTGGACGAGGTTGTCAATGTTAACAGCGGAATTAAGGTTGAACAGGCGAAGAAGAGCTTCGAGAAAACTAAGGTGGTTGGAGAATCATCAACTGCAGCTAGTGGTGAGGGTTCTGCTGGTGGAGAGGGAAGTGGGAAGCGTAGCTCTGAATTGTCATCCACGGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACAGCCAGATGCAGATAGTGATATCCTCTTTCGAGCAAGCTGCGGGGATAGGCTCAGCGAGGACGTACACTGCGCTTGCACTGCAAACAATTTCAAAGCAATTTCGGTGTCTGAAGGATGCTATAACAGGGCAAATCAGAGCAGCAAACAAGAGTTTGGGAGAAGAGGATTGCTTTAGGGCCAAAATTGAAGGGTCTAGACTTAGATATGTGGACCATCATCTAAGGCAACAGAAAGCTATACAGCAGTTGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCCTTCGTGCTTGGCTCTTTGAACACTTTCTCCACCCTTACCCCAAGGACTCAGACAAACACATGCTTGCAAAACAAGCAGGGCTTACCAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGTGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGAGCACGAACTAAATGGTTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCTACTACAAAATCAACAACACAAGAGAAACGTCCTGCCTCAGAAATTGAATCTAAAAGTTTCAATTCCAAACAAGATGTTTCCAAGAAACAGAACACTTCAATAGTTTCAACTTCTCCACCATCAACATCACCTATTGGGGGAAGCGTTAAGAACCAATCAGGATTCAGTTTCATGGGGTCATCAGAACTTGATGGAATCACACAAGGAAGTCCTAAAAAACCAAGGAACCATGAAATTCTACACTCTCCAAACCGTGTCCCTTCAATCAACATGGATGTCAAAGCCAATAATGAGGCAAACAACGAACAACAACTCTCAATGGATGAGAGGCAGGGCAGGGATGGCTACTCCTTCATGGGGAACCAAACAAACTTCATTAGTAGTTTTGGACAATACCCTATGGAGGAAATTGGTAGGTTTGATGCTGAGCAATTCACACCAAGGTTTTCAGGTAATAATGGGGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACATTGTCAGGGACACACCAAACCTTTCTCCCAAACCAAAACATTCAACTAGGAAGAGGGTTGGACATTGGTGAACCAAACCAGTTTGGTGCCTTGAGTAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGCATCAACATGCAGAACCCAAAGAGGTTTGCAGCACAATTGCTACCAGACTTTGTGGCCTAA 1983 0.5038 MATYFHSNSEIQAGADGLQTLVLMNPGYVQYSDTPPPHGGGNLVFLNSAAGNASLQSLPHAPPPHTQQFVGVPLSAAGQEPPPQQPSMHHDVSALHGFLPRMQYNLWNTIDPNAAAREAPRATQGLSLSLHGEDVRASSSSASRASNGGGVAGIQSVLLSSKYLKATQELLDEVVNVNSGIKVEQAKKSFEKTKVVGESSTAASGEGSAGGEGSGKRSSELSSTERQEIQMKKAKLINMLDEVEQRYRQYHSQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFRAKIEGSRLRYVDHHLRQQKAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQAGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGSEEKSSKSGEDPTTKSTTQEKRPASEIESKSFNSKQDVSKKQNTSIVSTSPPSTSPIGGSVKNQSGFSFMGSSELDGITQGSPKKPRNHEILHSPNRVPSINMDVKANNEANNEQQLSMDERQGRDGYSFMGNQTNFISSFGQYPMEEIGRFDAEQFTPRFSGNNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRGLDIGEPNQFGALSNSTSHSSAAFESINMQNPKRFAAQLLPDFVA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03014 660 CDD homeodomain 342 403 IPR001356 GO:0003677
Pumo3g03014 660 MobiDBLite consensus disorder prediction 415 520 - -
Pumo3g03014 660 Coils Coil 226 253 - -
Pumo3g03014 660 SUPERFAMILY Homeodomain-like 343 409 IPR009057 -
Pumo3g03014 660 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 429 - -
Pumo3g03014 660 Pfam Associated with HOX 157 293 IPR006563 -
Pumo3g03014 660 SMART HOX_1 342 406 IPR001356 GO:0003677
Pumo3g03014 660 SMART prehox3 152 294 IPR006563 -
Pumo3g03014 660 Gene3D - 345 424 - -
Pumo3g03014 660 MobiDBLite consensus disorder prediction 415 447 - -
Pumo3g03014 660 MobiDBLite consensus disorder prediction 448 498 - -
Pumo3g03014 660 ProSiteProfiles 'Homeobox' domain profile. 339 402 IPR001356 GO:0003677
Pumo3g03014 660 MobiDBLite consensus disorder prediction 194 227 - -
Pumo3g03014 660 Pfam Homeobox KN domain 359 398 IPR008422 GO:0003677|GO:0006355
Pumo3g03014 660 FunFam BEL1-like homeodomain protein 9 345 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03014 Pumo-Chr3 54570253 54575767 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03014 1 660 Homeobox Transcription Factor Family AT2G35940 49.404 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo3g03014 POX 1.8e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03014 - - gmx:100810851 1144.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03014 3 54570253 54575767 Pumo3g03014 3 54570253 54575767 ECH
Pumo5g03266 5 81816842 81818875 Pumo3g03014 3 54570253 54575767 PCT