Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03013 ATGGACGAAATTGATGTTCCTCAATACTTCACATGCCCAATATCCCTCCAAATCATGAAGGACCCCGTCACGGCCATAACGGGCATAACATACGATCGAGAAAGCATAGAGCAATGGCTATTCTCCAATAAGAACACCACATGCCCCGTGTCCAACCAACCCCTCCCTAGAGACTCTGACCTAACCCCTAACCACACCCTTCGCCGATTGATCCAAGCTTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGGATTCCAACCCCAAAACCCCCTCTCAACAAAATCCAAGTCCTTAAACTCCTCAAAGACCTCAATGACCCCAAAAGCCTCTTGCAATTGGAGCTTCTTGCCGCGGAGAGCGAGAGGAACAAAAAGTGCTTGCTAGAGGCCGGGGTACCAAGGGCCATGATCATGTTCATTGTGAATTGTTATAGAAAAGGTCAAATCCAAAAGGGTCTCGAAGAAGCTCTTAGCATATTGCAATTTGTCAAGATCCCCAAGGAGGAATGTGCACTTCTCCTAAAGGACAACGACCAAATACTGGATTCTCTAACATGGGTTCTAAGCCGTGACGAGATGGAAAACTCTGTCGCCGTGAAATCACACGCGATTCTAGTACTAAAAAAAATCATCAACAAGGCTGACACGTGTCACGTTCTCGAGAGACTCAAACCCGAGTTCTTGGAAACAATCGTGAAGATTCTAAGACACAGGGTGACACAACAAGGGCTGAACGCTGCACTTCACGTCCTGCTAAGAGCTTGTTCCGTGACAAAACACAGGATCATGATGGTGGAAGGGGGTTTGGTTCACGAACTCGTCGAGATCGAATTAATGGCTCCAGAGAAGAGAATCACGGAACTAACACTAGCAATATTGTTTCATTTGTGTTCTTGTGCGAACGGGAGGGCCAAGTTTCTGAGCCACGAAGGGTCCATTGCGGTGGTGACCGAGAGGATACTGAAGGTTTCTGCGTCGGTGGACGATAGGGCCGTGTTTGTTCTCGCGATGGTTGCAAAGTTTTCGGGCACAAACGTGGTTTTTCAGGAGATGTTGAAAGTGGGAACCGTGGCGAAGCTTTGCATGCTGCTTCAGGCTGATCGTGCGAAGTATTTGAAGGACAAAGCGATGGAGATTCTCAAGGGTCACTCTGCGGCTTGGATGAACTCTCCTTGTTTTCCTCATACATCTTTTGGTACATACTTGAAATACTAA 1218 0.4762 MDEIDVPQYFTCPISLQIMKDPVTAITGITYDRESIEQWLFSNKNTTCPVSNQPLPRDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLNKIQVLKLLKDLNDPKSLLQLELLAAESERNKKCLLEAGVPRAMIMFIVNCYRKGQIQKGLEEALSILQFVKIPKEECALLLKDNDQILDSLTWVLSRDEMENSVAVKSHAILVLKKIINKADTCHVLERLKPEFLETIVKILRHRVTQQGLNAALHVLLRACSVTKHRIMMVEGGLVHELVEIELMAPEKRITELTLAILFHLCSCANGRAKFLSHEGSIAVVTERILKVSASVDDRAVFVLAMVAKFSGTNVVFQEMLKVGTVAKLCMLLQADRAKYLKDKAMEILKGHSAAWMNSPCFPHTSFGTYLKY 405
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03013 405 SUPERFAMILY RING/U-box 3 79 - -
Pumo3g03013 405 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Pumo3g03013 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Pumo3g03013 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Pumo3g03013 405 SUPERFAMILY ARM repeat 114 371 IPR016024 -
Pumo3g03013 405 CDD RING-Ubox_WDSUB1-like 7 64 - -
Pumo3g03013 405 FunFam RING-type E3 ubiquitin transferase 6 80 - -
Pumo3g03013 405 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Pumo3g03013 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Pumo3g03013 405 Gene3D - 97 390 IPR011989 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo3g03013 Pumo-Chr3 54549259 54551348 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03013 2 394 U-box Gene Family AT3G11840 41.270 4.95e-113 337