Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03012 ATGGAGGAGATCGACGTGCCTCCGTTCTTCGTGTGCCCCATTTCCCTTGAACTCATGAAGGACCCCGTAACGGTCTCCACCGGCATCACCTACGACCGCGACAGCATCGAGAAGTGGCTCTTCGCCTCCAAGAACGACACGTGTCCCGTCACGAAGCAGTCCCTCCTCCCGGACCTTACTCCGAACCACACGCTCCGGAGACTCATCCAAGCCTGGTGCACCGTCAACGCCTCCCACGGCGTCCAACGAATCCCCACTCCAAAACCACCCGTCGACAAAACCCTCATCGAAAAGCTCCTCCGCGACGCCTCGGACTCCCCGAACCTCCAGCTCCGGTCCATCCGGACCCTCAAGTCCATCGCCTCGGAGTCCCAGACCAACAAACGCTGCATCGAATCCGCAGCGGGTACGGTCAATTTCTTAGCCTCGATCATAACCACCGCCACCACCACCGCCACCAACTTGCTCGACGACGTCGAGCTGGAGCTGAAAACAAACGCAGCCGACGAAGCATTGAGCGTGTTGCACAGCATTCAGCTATCCGAGCCCGGGTTAAAGTCTCTGTTGAACCGTCCAGAATTTATTAACTCTTTAACCAAAATTATGCAGAGAGGGATCTACGAGTCACGCGCCTACGCGGTCTTCTTGCTGAATTCGTTATCCGAAGTGGCAGATCCAGCGCAGTTAATTAACCTAAAAATCGACCTCTTCACTGAATTGGTTCAAGTTCTTAAGGATCAGGTTTCGCAGAAAGCATCTAAGGCGACGCTGAAGACACTGATCCAGATGTGTCCGTGGGGGAGGAACAGGGTGAAGGCGGTGGAGGCCGGAGCGGTTCCGGTTCTGGTGGAGCTTCTTCTCGACTGCAAGGAGAGGAAGCCATGCGAGATGATGTTAGTTTTATTGGAGATTTTATGTCAGAGTGCGGACGGGAGGGCGGGGCTGTTGTCCCACGCGGCGGGGCTGGCGATCGTGGCGAAGAAGATTCTGAGGGTGTCCACAATGGCGAATGATAGGGCTGCGAAGATTCTGTTGTCCGTGTGTAGATTCTCCGCCACGCCGGGCGTGGTGCAGGAGATGGTGCAGCTGGGGGTGGTGGCGAAGCTGTGCTTGGTGCTGCAGGTGGACAGTGGGAACAAGGCCAAAGAGAAAGCTAGGGAGATTCTCAAACTGCATGCCAGGGCGTGGAGCAACTCGCCCTGCATACCGCACAATTTGCTGGCTTCGTACCCAACGAGTTCATGA 1245 0.5622 MEEIDVPPFFVCPISLELMKDPVTVSTGITYDRDSIEKWLFASKNDTCPVTKQSLLPDLTPNHTLRRLIQAWCTVNASHGVQRIPTPKPPVDKTLIEKLLRDASDSPNLQLRSIRTLKSIASESQTNKRCIESAAGTVNFLASIITTATTTATNLLDDVELELKTNAADEALSVLHSIQLSEPGLKSLLNRPEFINSLTKIMQRGIYESRAYAVFLLNSLSEVADPAQLINLKIDLFTELVQVLKDQVSQKASKATLKTLIQMCPWGRNRVKAVEAGAVPVLVELLLDCKERKPCEMMLVLLEILCQSADGRAGLLSHAAGLAIVAKKILRVSTMANDRAAKILLSVCRFSATPGVVQEMVQLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWSNSPCIPHNLLASYPTSS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03012 414 Gene3D - 91 233 IPR011989 -
Pumo3g03012 414 Gene3D - 234 402 IPR011989 -
Pumo3g03012 414 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Pumo3g03012 414 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Pumo3g03012 414 CDD RING-Ubox_PUB 7 55 IPR045210 -
Pumo3g03012 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Pumo3g03012 414 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Pumo3g03012 414 PANTHER WDSAM1 PROTEIN 2 403 IPR045185 GO:0061630
Pumo3g03012 414 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Pumo3g03012 414 SUPERFAMILY RING/U-box 3 79 - -
Pumo3g03012 414 SUPERFAMILY ARM repeat 96 384 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03012 Pumo-Chr3 54519017 54520600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03012 2 411 U-box Gene Family AT2G35930 56.835 7.86e-172 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03012 - - gmx:100795263 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03012 3 54519017 54520600 Pumo3g03012 3 54519017 54520600 ECH
Pumo5g03269 5 81860358 81861751 Pumo3g03012 3 54519017 54520600 PCT