Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03011 ATGGCGACATATTTTCATAGTAACTCCGAAATTCAAGCCGGTGCCGACGGCCTCCAAACTCTCGTACTAATGAACCCCGGCTACGTCCAATACTCCGACACGCCGCCGCCACACGGCGGCGGAAACCTCGTATTCCTCAACTCCGCCGCCGGCAACGCCTCCCTGCAAAGCCTCCCCCACGCGCCGCCCCCTCACACGCAGCAATTCGTCGGCGTGCCGCTCTCGGCTGCCGGGCAGGAGCCGCCGCCGCAGCAGCCGTCCATGCACCACGACGTCTCCGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAACCTCTGGAACACGATTGACCCCAACGCGGCGGCGCGTGAGGTCCCACGCGCCACCCAGGGGCTCTCGCTGAGCCTGCACGGCGAGGACGTGCGCGCGTCGTCGTCCTCGGCCTCCAGGGCGTCCAACGGCGGCGGCGTGGCGGGGATTCAGAGCGTGCTGTTGAGTTCCAAGTACTTGAAAGCCACGCAGGAGCTTCTGGACGAGGTTGTCAATGTTAACAGCGGAATTAAGGTTGAACAGGCGAAGAAGAGCTTCGAGAAAACTAAGGCGGTTGGAGAATCATCAACTGCAGCTAGTGGTGAGGGTTCTGCTGGTGGAGAGGGAAGTGGGAAGCGTAGCTCTGAATTGTCATCTACGGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACAGCCAGATGCAGATAGTGATATCCTCTTTCGAGCAAGCTGCGGGGATAGGCTCAGCGAGGACGTACACTGCGCTTGCACTGCAAACAATTTCAAAGCAATTTCGGTGTCTGAAGGATGCTATAACAGGGCAAATCAGAGCAGCAAACAAGAGTTTGGGAGAAGAGGATTGCTTTAGGGCCAAAATTGAAGGGTCTAGACTCAGATATGTGGACCATCATCTAAGGCAACAGAAAGCTATACAGCAGTTGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCCTTCGTGCTTGGCTCTTTGAACACTTTCTCCACCCTTACCCCAAGGACTCAGACAAACACATGCTTGCAAAACAAGCAGGGCTTACCAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGTGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGAGCACGAACTAAATGGTTCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCTACTACAAAATCAACAACTCAAGAGAAACGTCCTGCCTCAGAAATTGAATCTAAAAGTTTCAATTCCAAACAAGATGTTTCCAAGAAACAGAACACTTCAATAGTTTCAACTTCTCCACCATCAACATCACCTATTGGGGGAAGCGTTAAGAACCAATCAGGATTCAGTTTCATGGGGTCATCAGAACTTGATGGAATCACACAAGGAAGTCCTAAAAAACCAAGGAACCATGAAATTCTACACTCTCCAAACCGTGTCCCTTCAATCAACATGGATGTCAAAGCCAATAATGAGGCAAACAATGAACAACAACTCTCAATGGATGAGAGGCAGGGCAGGGATGGCTACTCCTTCATGGGGAACCAAACAAACTTCATTAGTAGTTTTGGACAATACCCTATGGAGGAAATTGGTAGGTTTGATGCTGAGCAATTCACACCAAGGTTTTCAGGTAATAATGGGGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACATTGTCAGGGACACACCAAACCTTTCTGCCAAACCAAAACATTCAACTAGGAAGAGGGTTGGACATTGGTGAACCAAACCAGTTTGGTGCCTTGAGTAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGCATCAACATGCAGAACCCAAAGAGGTTTGCAGCACAATTGCTACCAGACTTTGTGGCCTAA 1983 0.5033 MATYFHSNSEIQAGADGLQTLVLMNPGYVQYSDTPPPHGGGNLVFLNSAAGNASLQSLPHAPPPHTQQFVGVPLSAAGQEPPPQQPSMHHDVSALHGFLPRMQYNLWNTIDPNAAAREVPRATQGLSLSLHGEDVRASSSSASRASNGGGVAGIQSVLLSSKYLKATQELLDEVVNVNSGIKVEQAKKSFEKTKAVGESSTAASGEGSAGGEGSGKRSSELSSTERQEIQMKKAKLINMLDEVEQRYRQYHSQMQIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFRAKIEGSRLRYVDHHLRQQKAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQAGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGSEEKSSKSGEDPTTKSTTQEKRPASEIESKSFNSKQDVSKKQNTSIVSTSPPSTSPIGGSVKNQSGFSFMGSSELDGITQGSPKKPRNHEILHSPNRVPSINMDVKANNEANNEQQLSMDERQGRDGYSFMGNQTNFISSFGQYPMEEIGRFDAEQFTPRFSGNNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRGLDIGEPNQFGALSNSTSHSSAAFESINMQNPKRFAAQLLPDFVA 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03011 660 SMART prehox3 152 294 IPR006563 -
Pumo3g03011 660 CDD homeodomain 342 403 IPR001356 GO:0003677
Pumo3g03011 660 MobiDBLite consensus disorder prediction 415 520 - -
Pumo3g03011 660 Coils Coil 226 253 - -
Pumo3g03011 660 SUPERFAMILY Homeodomain-like 343 409 IPR009057 -
Pumo3g03011 660 SMART HOX_1 342 406 IPR001356 GO:0003677
Pumo3g03011 660 Pfam Associated with HOX 157 293 IPR006563 -
Pumo3g03011 660 Gene3D - 345 424 - -
Pumo3g03011 660 MobiDBLite consensus disorder prediction 415 447 - -
Pumo3g03011 660 MobiDBLite consensus disorder prediction 448 498 - -
Pumo3g03011 660 ProSiteProfiles 'Homeobox' domain profile. 339 402 IPR001356 GO:0003677
Pumo3g03011 660 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 426 - -
Pumo3g03011 660 Pfam Homeobox KN domain 359 398 IPR008422 GO:0003677|GO:0006355
Pumo3g03011 660 FunFam BEL1-like homeodomain protein 9 345 407 - -
Pumo3g03011 660 MobiDBLite consensus disorder prediction 188 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03011 Pumo-Chr3 54499498 54504995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03011 1 660 Homeobox Transcription Factor Family AT2G35940 49.204 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo3g03011 POX 1.5e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03011 - - gmx:100810851 1141.72