Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03010 ATGGACGAAATTGATGTTCCTCAATACTTCACATGCCCAATATCCCTCCAAATCATGAAGGACCCCGTCACGGCCATAACGGGCATAACATACGATCGAGAAAGCATAGAGCAATGGCTATTCTCCAATAAGAACACCACATGCCCCGTGTCCAACCAACCCCTCCCTAGAGACTCTGACCTAACCCCTAACCACACCCTTCGCCGATTGATCCAAGCTTGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGGATTCCAACCCCAAAACCCCCTCTCAACAAAATCCAAGTCCTTAAACTCCTCAAAGACCTCAATGACCCCAAAAGCCTCTTGCAATTGGAGCTTCTTGCCGCGGAGAGCGAGAGGAACAAAAAGTGCTTGCTAGAGGCCGGGGTACCAAGGGCCATGATCATGTTCATTGTGAATTGTTATAGAAAAGGTCAAATCCAAAAGGGTCTCGAAGAAGCTCTTAGCATATTGCAATTTGTCAAGATCCCCAAGGAGGAATGTGCACTTCTCCTAAAGGACAACGACCAAATACTGGATTCTCTAACATGGGTTCTAAGCCGTGACGAGATGGAAAACTCTGTCGCCGTGAAATCACACGCGGTTCTAGTACTAAAAAAAATCATCAACAAGGCTGACACGTGTCACGTTCTCGAGAGACTCAAACCCGAGTTCTTCGAAACAATCGTGAAGATTCTAAGACACAGGGTGACACAACAAGGGCTGAACGCTGCACTTCACGTCCTGCTAAGAGCTTGTTCCGTGACAAAACACAGGATCATAATGGTGGAAGGGGGTTTGGTTCACGAACTCGTCGAGATCGAATTAATGGCTCCAGAGAAGAGAATCACGGAACTAACACTAGCAATATTGTTTCATTTGTGTTCTTGTGCGAACGGGAGGGCCAAGTTTCTGAGCCACGAAGGGTCCATTGCGGTGGTGACCGAGAGGATACTGAAGGTTTCTGCGTCGGTGGACGATAGGGCCGTGTTTGTTCTCGCGATGGTTGCAAAGTTTTCGGGCACAAACGTGGTTTTTCAGGAGATGTTGAAAGTGGGAACCGTGGCGAAGCTTTGCATGCTGCTTCAGGCTGATCGTGCGAAGTATTTGAAGGACAAAGCGATGGAGATTCTCAAGGGTCACTCTGCGGCTTGGATGAACTCTCCTTGTTTTCCTCATACATCTTTTGGTACATACTTGAAATACTAA 1218 0.4762 MDEIDVPQYFTCPISLQIMKDPVTAITGITYDRESIEQWLFSNKNTTCPVSNQPLPRDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLNKIQVLKLLKDLNDPKSLLQLELLAAESERNKKCLLEAGVPRAMIMFIVNCYRKGQIQKGLEEALSILQFVKIPKEECALLLKDNDQILDSLTWVLSRDEMENSVAVKSHAVLVLKKIINKADTCHVLERLKPEFFETIVKILRHRVTQQGLNAALHVLLRACSVTKHRIIMVEGGLVHELVEIELMAPEKRITELTLAILFHLCSCANGRAKFLSHEGSIAVVTERILKVSASVDDRAVFVLAMVAKFSGTNVVFQEMLKVGTVAKLCMLLQADRAKYLKDKAMEILKGHSAAWMNSPCFPHTSFGTYLKY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03010 405 SUPERFAMILY RING/U-box 3 79 - -
Pumo3g03010 405 SUPERFAMILY ARM repeat 114 371 IPR016024 -
Pumo3g03010 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Pumo3g03010 405 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Pumo3g03010 405 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Pumo3g03010 405 CDD RING-Ubox_WDSUB1-like 7 64 - -
Pumo3g03010 405 FunFam RING-type E3 ubiquitin transferase 6 80 - -
Pumo3g03010 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Pumo3g03010 405 Gene3D - 97 390 IPR011989 -
Pumo3g03010 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03010 Pumo-Chr3 54479895 54481981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03010 2 394 U-box Gene Family AT3G11840 41.270 1.03e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03010 - - gmx:100798446 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03010 3 54479895 54481981 Pumo3g03010 3 54479895 54481981 ECH
Pumo3g03010 3 54479895 54481981 Pumo5g03269 5 81860358 81861751 PCT