Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03009 ATGGAGGAGATCGACGTGCCTCCGTTCTTCGTGTGCCCCATTTCCCTTGAACTCATGAAGGACCCCGTAACGGTCTCCACCGGCATCACCTACGACCGCGACAGCATCGAGAAGTGGCTCTTCGCCTCCAAGAACGACACGTGTCCCGTCACGAAGCAGCCCCTCCTCCCGGACCTCACTCCGAACCACACGCTCCGGAGACTCATCCAAGCCTGGTGCACCGTCAACGCCTCCCACGGCGTCCAACGAATCCCCACTCCAAAACCACCCGTCGACAAAACCCTCATCGAAAAGCTCCTCCGCGACGCCTCGGACTCCCCGAACCTCCAGCTCCGGTCCATCCGGACCCTCAAGTCCATCGCCTCGGAGTCCCAGACCAACAAACGCTGCATCGAATCCGCAGCGGGCGATTTCTTAGCCTCGATCATAACCACTGCCACCACCACCGCCACCAACTTGCTCGACGACGTCGAGCTGGAGCTGAAAACAAACGCAGCCGACGAAGCATTGAGCGTGTTGCACAGCATTCAGTTATCCGAGCCCGGGTTAAAGTCTCTGTTGAACCGTCCAGAATTTATTAACTCTTTAACCAAAATTATGCAGAGAGGGATCTACGAGTCACGCGCCTACGCGGTCTTCTTGCTGAATTCGTTATCCGAAGTGGCAGATCCAGCGCAGTTAATTAACCTAAAAATCGACCTCTTCACTGAATTGGTTCAAGTTCTTAAGGATCAGGTTTCGCAGAAAGCATCTAAGGCGACGCTGAAGACACTGATCCAGATGTGTCCGTGGGGGAGGAACAGGGTGAAGGCGGTGGAGGCCGGGGCGGTTCCGGTTCTGGTGGAGCTTCTTCTCGACTGCAAGGAGAGGAAGCCATGCGAGATGATGTTAGTTTTATTGGAGATTTTATGTCAGAGTGCGGACGGGAGGGCGGGGCTGTTGTCCCACGCGGCGGGGCTGGCGATCGTGGCGAAGAAGATTCTGAGGGTGTCCACAATGGCGAATGATAGGGCTGCGAAGATTCTGTTGTCCGTGTGTAGATTCTCCGCCACGCCGGGCGTGGTGCAGGAGATGGTGCAGCTGGGGGTGGTGGCGAAGCTGTGCTTGGTGCTGCAGGTGGACAGTGGGAACAAGGCCAAAGAGAAAGCTAGGGAGATTCTCAAACTGCATGCCAGGGCGTGGAGCAACTCGCCCTGCATACCACACAATTTGCTTGCTTCGTATCCAACGAGTTCATGA 1239 0.5617 MEEIDVPPFFVCPISLELMKDPVTVSTGITYDRDSIEKWLFASKNDTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGVQRIPTPKPPVDKTLIEKLLRDASDSPNLQLRSIRTLKSIASESQTNKRCIESAAGDFLASIITTATTTATNLLDDVELELKTNAADEALSVLHSIQLSEPGLKSLLNRPEFINSLTKIMQRGIYESRAYAVFLLNSLSEVADPAQLINLKIDLFTELVQVLKDQVSQKASKATLKTLIQMCPWGRNRVKAVEAGAVPVLVELLLDCKERKPCEMMLVLLEILCQSADGRAGLLSHAAGLAIVAKKILRVSTMANDRAAKILLSVCRFSATPGVVQEMVQLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWSNSPCIPHNLLASYPTSS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03009 412 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Pumo3g03009 412 SUPERFAMILY RING/U-box 3 79 - -
Pumo3g03009 412 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Pumo3g03009 412 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Pumo3g03009 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Pumo3g03009 412 CDD RING-Ubox_PUB 7 55 IPR045210 -
Pumo3g03009 412 PANTHER WDSAM1 PROTEIN 2 401 IPR045185 GO:0061630
Pumo3g03009 412 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Pumo3g03009 412 Gene3D - 89 397 IPR011989 -
Pumo3g03009 412 SUPERFAMILY ARM repeat 98 383 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03009 Pumo-Chr3 54449414 54450996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03009 2 409 U-box Gene Family AT2G35930 56.490 2.80e-170 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03009 - - gmx:100795263 708.368