Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo3g03003 | ATGAACGACTTGTTCTCTGGTTCCTTCTCTCGCTTCCGCGGCGAAAACACCTCGCCGGACCACCACCACGTCATCGAGATGGGCGCCGCCGCCCGAGGCGGCGGCGCCCGCGGCGGCGAGGTGAACCTCGACAAGTTCTTCGAGGACGTTGAAGGCGTGAAGGAGGAACTGAAAGAATTAGAAGGCTTAGCGCAGAGTTTGAGAAGCAGCCACGAGCAGAGCAAGACGCTGCACAACGCGAAGGCCGTGAGGGACCTGCGGTCGCGCATGGACGGCGACGTTTCGGTGGCTCTGAAGAAGGCGAAGCTGATAAAGTTGAAACTCGAGGCTCTGGAGCGGTCCAACGCCGCGAACCGGAACCTGCCCGGGTGCGGGCCCGGTTCCTCCTCGGACCGGACCCGGACCTCCGTGGTCAACGGGCTCAAGAAGAAGCTGAAGGACTCCATGGAGAGCTTCAACGAGATTCGGGAGCTTGTGTCCTCCGAGTACCGCGAGACCGTGCAGCGGCGGTACTTCACCGTCACCGGCGAGAATCCTGATGATAAGACGCTCGATCTCTTGATCTCCACCGGTGAGAGTGAGACCTTCCTTCAGAAAGCCATTCAAGAGCAAGGCAGGGGTAGAATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGATAGAAAAGAGTCTCAAGGAGTTGCACCAAGTTTTCCTTGACATGACAGTGTTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCATTCGTTTGTGCACACTGGAGCTGAGCAGTTGCAGACTGCGCGGAAGCACCAGAAAAACACCAGGAAATGGACCTGCTATTGTATCATACTTCTTCTGGTGATCATCTTGGTTGTGGTCCTCTTCACTGTGAGACCGTGGGAAAATAGCAGTAGTGGCAGCAATGGTGGTGGTCAGCCTGCACCAGCTCAAACACCTCCATCACCTCCACCTCCTGTTAATGCTTAA | 1011 | 0.5549 | MNDLFSGSFSRFRGENTSPDHHHVIEMGAAARGGGARGGEVNLDKFFEDVEGVKEELKELEGLAQSLRSSHEQSKTLHNAKAVRDLRSRMDGDVSVALKKAKLIKLKLEALERSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNEIRELVSSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAHSFVHTGAEQLQTARKHQKNTRKWTCYCIILLLVIILVVVLFTVRPWENSSSGSNGGGQPAPAQTPPSPPPPVNA | 336 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo3g03003 | 336 | SMART | tSNARE_6 | 208 | 275 | IPR000727 | - | |
| Pumo3g03003 | 336 | Pfam | SNARE domain | 249 | 301 | IPR000727 | - | |
| Pumo3g03003 | 336 | CDD | SynN | 43 | 200 | IPR006011 | GO:0016020 | |
| Pumo3g03003 | 336 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 40 | 170 | - | - | |
| Pumo3g03003 | 336 | ProSitePatterns | Syntaxin / epimorphin family signature. | 219 | 258 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Pumo3g03003 | 336 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 213 | 275 | IPR000727 | - | |
| Pumo3g03003 | 336 | Coils | Coil | 43 | 70 | - | - | |
| Pumo3g03003 | 336 | Gene3D | - | 209 | 305 | - | - | |
| Pumo3g03003 | 336 | MobiDBLite | consensus disorder prediction | 311 | 336 | - | - | |
| Pumo3g03003 | 336 | SMART | SynN_4 | 38 | 164 | IPR006011 | GO:0016020 | |
| Pumo3g03003 | 336 | Pfam | Syntaxin | 45 | 248 | IPR006011 | GO:0016020 | |
| Pumo3g03003 | 336 | CDD | SNARE_syntaxin1-like | 212 | 274 | - | - | |
| Pumo3g03003 | 336 | SUPERFAMILY | t-snare proteins | 41 | 268 | IPR010989 | GO:0016020|GO:0016192 | |
| Pumo3g03003 | 336 | PANTHER | SYNTAXIN | 69 | 296 | IPR045242 | - | |
| Pumo3g03003 | 336 | FunFam | Syntaxin 132 | 206 | 306 | - | - | |
| Pumo3g03003 | 336 | Gene3D | - | 40 | 173 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo3g03003 | Pumo-Chr3 | 54342174 | 54345615 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo3g03003 | 31 | 331 | SNARE and Associated Proteins | AT3G11820 | 75.081 | 2.72e-156 | 439 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo3g03003 | K08486 | - | gmx:100809258 | 543.888 |