Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03002 ATGAATGACTTGTTCTCCGGCTCCTTCTCCCGTAACAACAACGACCAAGTCTCGCCGGACCACCATGTGATCGAGATGGCGGCGGCATCGTCGCCATCGGCTGAGAGCAGCGTGAACCTGGAAAAGTTCTTTCAAGAAGTTGAGCAGGTAAAAGAGGAGCTGAAGGAGCTGGAGCGTCTCCATGAAACCCTACGTGGATCCCATGAGAAGAGCAAGACCCTTCACAGCGCGAAGGCTGTGAAGGAGCTTCGCTCACGCATGGATGCTGACGTGGCACTCGCTTTGAAGAAAGCGAAGCTCGTCAAGGTCCGGCTCGAGGCACTAGACCGGTCTAACGAGGCAAGTCGGAGCTTGCCTGGGTCAGGACCCGGGAAACCGTGCAGCGTAGATATTATACTGTCACCGGGAGAGAACCCTGATGACAAAACCATTGATCTTCTCATTTCTACCGGTGAAAGTGAAACATTCTTGCAGAAGGCCATCCAGCAGCAAGGTAGAGCCAGCGTGATGGACACGATCCAAGAGATTCAAGAGAGGCACGACACGGTCAAGGAAATTGAGAGAAACCTAAACGAGCTGCACCAAGTGTTCTTGGACATGGCCGTGTTGGTGCAATCCCAGGGAGAACAACTGGACGACATCGAGAGCCACGTGGCACGCGCCAATTCGTACGTGCGGGGCGGGGTCCAGCAGCTGCACGTGGCAAGGAAGCACCAGAAGAACACCCGAAAGTGGACCTGCATAGCCATCATATTGCTCATTATTATCATCTTGATCATAGTTCTTCCTATAGTTCTAAGAAAATGA 807 0.5279 MNDLFSGSFSRNNNDQVSPDHHVIEMAAASSPSAESSVNLEKFFQEVEQVKEELKELERLHETLRGSHEKSKTLHSAKAVKELRSRMDADVALALKKAKLVKVRLEALDRSNEASRSLPGSGPGKPCSVDIILSPGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIILLIIIILIIVLPIVLRK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03002 268 Coils Coil 40 67 - -
Pumo3g03002 268 Gene3D - 162 266 - -
Pumo3g03002 268 FunFam Syntaxin 132 166 266 - -
Pumo3g03002 268 ProSitePatterns Syntaxin / epimorphin family signature. 179 218 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pumo3g03002 268 Pfam SNARE domain 209 261 IPR000727 -
Pumo3g03002 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Pumo3g03002 268 CDD SNARE_syntaxin1-like 172 232 - -
Pumo3g03002 268 Pfam Syntaxin 42 122 IPR006011 GO:0016020
Pumo3g03002 268 Pfam Syntaxin 135 208 IPR006011 GO:0016020
Pumo3g03002 268 Gene3D - 37 142 - -
Pumo3g03002 268 SMART tSNARE_6 168 235 IPR000727 -
Pumo3g03002 268 PANTHER SYNTAXIN 39 257 IPR045242 -
Pumo3g03002 268 SMART SynN_4 35 188 IPR006011 GO:0016020
Pumo3g03002 268 SUPERFAMILY t-snare proteins 39 228 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03002 Pumo-Chr3 54337941 54339948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03002 29 247 SNARE and Associated Proteins AT3G11820 59.375 3.58e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03002 K08486 - gmx:100808718 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03002 3 54337941 54339948 Pumo3g03002 3 54337941 54339948 ECH
Pumo5g03273 5 81903037 81905363 Pumo3g03002 3 54337941 54339948 PCT