Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03001 ATGGCTGGTTCAGCCGGGGCTTCCTCCCTTATCTGCAACATTCCACTCTCCTTTAACTTTCCATACACACTCATATCCTTGAAACCCCTCAACCTCAACCCCCAACTTTTCATTGCTTCTCCTCTCTCACTCTCACTTTACCATTTCCCCCTCTCTTCAGTTTCCTTCGAAGGCACTCAAAAACCCCTCGAATGCAAAACTTTGCAAAAACCAGAGCCAGATGCGTCATGCTCAAACCAATCAGCGAGGCTCTTTGTGGGAAACTTGCCTTACTCAATGCCCTCTTCCCAGTTGGCTCAGCTGTTTGGAGAGGCTGGCAATGTTGTATCCGTCGAGATTGTGTATGATGACATTATGGATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGTGTGGAGGAAGCTGAACGAACAATTCGAATGTTTGATGGCTCTCTTGGTTTGTTGACAAAGACAAGGACGAAAACCTCTTGGAAGACAATCCTCCTTACCATCAGAAACAAGATAACTTTGTCGTTAATTATCAACCTTGCTATCGAGTATATTGTTCTTGTGTGA 561 0.4492 MAGSAGASSLICNIPLSFNFPYTLISLKPLNLNPQLFIASPLSLSLYHFPLSSVSFEGTQKPLECKTLQKPEPDASCSNQSARLFVGNLPYSMPSSQLAQLFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSVEEAERTIRMFDGSLGLLTKTRTKTSWKTILLTIRNKITLSLIINLAIEYIVLV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03001 186 Gene3D - 54 159 IPR012677 -
Pumo3g03001 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 145 IPR000504 GO:0003723
Pumo3g03001 186 PANTHER OS02G0815200 PROTEIN 77 146 - -
Pumo3g03001 186 SMART rrm1_1 83 156 IPR000504 GO:0003723
Pumo3g03001 186 SUPERFAMILY RNA-binding domain, RBD 75 146 IPR035979 GO:0003676
Pumo3g03001 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 145 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03001 Pumo-Chr3 54320875 54327503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03001 84 141 Eukaryotic Initiation Factors Gene Family AT4G34110 36.207 1.44e-06 45.8