Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02999 ATGCTTCCAATTAACCTGACATCCGATGATGCACCAACTTACATAAATGTTAAGCAGTACCATGGAATCATCAGATGCCATCAATCACGTGCAAAAGTTGTACTTGAGAATAAATTGATAAAACGTCGCAAGGATGCAAAGCCTTGTGTACTTGTAAAAACAAGACTAGAAACACTAGTGGAAGACCATTTGTTATCTGAGACAAATCAAAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTATTCACGGGATGGTTTTGATGGCTTTTCTGTCAATCCTCTTGGATCTTCCATCCCCTCTCTTACATGTAGTGGGCATGGTATCATCATGCCCACTAAATGGGGTTTGATTTGTAAGCAAACTAGTGGGCTTGGTGCTGCAATGTTGCACCAAACCCCATCCTTGCAAGGGGACCAGGTGAAGAGGTTCTGTTGCAGTTTCTTGATTGTGACGAACTTAGTTCCGAAGGCGTGCCTCGACATCTGGTTTTAG 501 0.4311 MLPINLTSDDAPTYINVKQYHGIIRCHQSRAKVVLENKLIKRRKDAKPCVLVKTRLETLVEDHLLSETNQSSPNISGSEVTSMYSRDGFDGFSVNPLGSSIPSLTCSGHGIIMPTKWGLICKQTSGLGAAMLHQTPSLQGDQVKRFCCSFLIVTNLVPKACLDIWF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02999 166 ProSiteProfiles NF-YA/HAP2 family profile. 9 44 IPR001289 GO:0003700|GO:0006355
Pumo3g02999 166 Gene3D - 9 63 - -
Pumo3g02999 166 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 12 45 IPR001289 GO:0003700|GO:0006355
Pumo3g02999 166 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 44 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02999 Pumo-Chr3 54284012 54285156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02999 1 43 CCAAT-HAP2 Transcription Factor Family AT3G05690 53.333 4.79e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo3g02999 CBFB_NFYA 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02999 K08064 - gmx:100808195 115.931