LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g02998	ATGGCTCTGCAACCATCCTCTTCTTCCTTTAGTTATAAATTCACCTACGATGTCTTTCTCAGTTTCCGAGGGGAAGATACTCGTTATGCTTTCACTGGCAATCTCGACAAAGCTCTTTGCAACAAAGGAATTCACACCTTCATTGATGACCACCAGGTCCCAAGAGGGGACCAAATCACCTCGGCACTTTATAAGGCAATTGAAGAGTCCAGAATTTTCATCATCGTCCTCTCCCACAACTATGCATCTTCCTCCTTTTGCTTAAGCAAACTAGCTCACATCCTTAACTTTATTAAGGGCAAGGGTATCTTGGTTTTGCCAATTTTTTACAACGTGGATCCTTCTCATGTTAGACACCACAGAGGTAGTTTTGGAGAAGCATTGGCTAATCATGAAAAGAAGTTCAAAGCTGATAAAGAGGGTTTCGAGCATAACATGAAGAAGCTGGAGGAATGGAAGAAGGCTCTGCGTGATGCAGCTAACTTATCTGGTTATCATTTCAAACATGGGGACGGATATGAACATGAGTTTATTCAGAAGATTGTTGAATTGGTCTCTAGCAAGATTAATCGTGTTCCTTTACCTATTGCGGATTACCCTGTTGGACTAGAGTCACAAGTGCTAAAAGTAAAGAAACTTCTGGATGTTCGATCTAATGGTGTTGTCCACATGGTAGGGATCCATGGACTGGGTGGCATTGGTAAAACGACACTTGCTGTCGCAGTTTATAATTCCATTGCTGACTATTTTGAAGGTTTATGTTTTCTTGAAAACGTGAGAGAAACTTCATACAAATATGGGTTACTACGTCTCCAAAGCAACCTTCTTTCTGAAATAGTTGGAGAGAAGGACATTAGGTTAACAAATGTCAGACAAGGAATTTCCATAATACAACATAGGCTCCAGCGAAAGAAGGTTCTGTTGATTCTAGATGATGTTGACAAACAGAAACAGTTAGACGCCATTGTTGGAAGACCAAATTGGTTTGGTCCTGGTAGTAGAGTCATCATTACTACTCGGGACAAACAATTGCTAGCTTGTCATGGTGTGGAAAGAATGTATGAGGTGGAAGAATTGAAGAAGGAAGATGCTCTTCAATTACTCAGTTGGAAAGCTTTTAAAAAGGACAAAATTGATCCAAGTTATGAGGGTGTCTTGAATCAAGCAGTAACTTATGCTTCAGGCCTTCCACTGGCTTTAGAAGTAATAGGTTCCAACTTATTTCGAAAAAATACGGAACAATGGAAATCTGCTTTAAATCGATATGAAGGAATTCCTAATAAAGCAATCCAAGAGATACTTAAAGTAAGCTATGATGCTTTGGAAGAAGATCAACAAAATGTTTTTCTTGACATAGCTTGTTGCTTTAAAGAATGTGAATTGGCAAAGGTCCAAGATATACTTCATGCTCATCATGACAATTGCATGAAATATCATATTGAAGTGCTTGTTGATAAATCTCTTATAAAGATTAATAGGTATGGTGAGGTGACACTACATGATTTGATAGAGGACATGGGTAAAGAAATTGTCAGGAAAGAATCACCAAATGAGCCTGGGAAACGTAGCAGGTTATGGTTCCCTGAAGATATAGCTGATGTTTTAGAAAAAAATAAGGGAAGTAGTCAGATTGAAATCATATTTTTGGATTTCCCCTTATCTAAAGAAGGAGAAGTAGAATGGGATGGAGATGCTTTCAAGACGATGACAAATCTCAAAACACTTATTATTAGAAATTGTGTTTTTTCCAAAGGTCCCAAACATCTTCCTAATACTTTAAGAGTGTTGGATTGGTGGAGGTATCCTTCACAGGATTTGCCATGTGATTTTCATCCGAAGAAACTTGCTATATGCAAGTTACCCAAAAGTTTCTTTACATCACTGGGGTTGGCTGCCTTATTTTCAAAAAAGAAGTTGCTGAATTTGACAAGTTTGAATTTTGACTGGTGTCAATATTTAACACAGATACCTGATGTATCTTGTCTCCGACATTTGGAAAAATTATCATTTCAAAGGTGTAGTAATTTATTTACAATCCACTATTCAGTTGGGCTCTTGGAAAAACTTAAAATCTTGAATGCTGTTGGTTGTGACAAGCTCAAGAGTTTTCCACCCATGAAGTTGACCTCTCTTGAACAACTCGAGCTTTCGCTTTGTGCCAGTCTGGAGAGTTTTCCAGAAATATTAGGAAAGATGGAAAATATATCACAACTCTCGTTGATAGAAAGTCCCATAAAAGAATTGCCACTTTCATTTCGAAATCTTACTCGGCTTCAAAAATTATGTCTGGTCAGTTATTTTGGAACGCAGACAATTTGCCAAAATGCTGGCATTTTCATTTGGATCATTTCCATGATGCCTGAACTGGCTGAGGTTGCAGCTTTTCATTGTAAAGGATGGATATTGCCTAACGAGGATGAGAATGCTGAAAAATTGAGCTTAACTGTGTCTTCAAACGTTCAACGTCTTTGTCTCCAAAACTGTAACTTGTCAGATGAATTTTTTCCAAAATTTCTCCCATATTTTGCTAATGTGAAGAAGTTAGACCTATCATTTAATAATTTCAGAGTTATTCCCGAATGCATCGAAGAATGCTGCTTTTTAACCAGGCTGAATTTGGATTATTGTGAGCATCTTCAAGAAATTAGAAGGATTCCTCCAAACTTGAAATATTTCTCAGCAAACGGATGCGTATCCTTGACTTCCTCATGTAGAAGCATGTTACTGAATCAGGAACTGCATGAGGCTGGTAACACCATCTTTTATTTGTCAGATGGTAAGATTCCAAAGTGGTTTGAGTACCAGACCTGGGGACAGTCAATTTCTTTCAGGTTCCATAACAAATTCCCAGCCATAGCTATTTGTCTTGTTGTGCGAGCATTCGGCGAGGACTCGCTGCCAAAAAGACATAGTTTTAGTCCCAGAGTGATCATCAATGGCAATAAACATGTGTGTGGCAGTTTGAGTATGGGAATGGATTGTACATTTCTTTTTGATCCACGGGAGGTGGAATTCATAGATAATTTAGATGAAGCACTTTTGGAAAATGACTGGAACCATGCAGAGATTACATGTGAAGATTTTAATTTCGTCCCAATCCTTATAAAATGGGGAATCCACGTATTGAAACAGCAAAGTAGCGTGGAGGATATTCAATTCACCAATCCCTGTAGAAAAAGAAAATCAGATGATGGTCTCAACAATTCAGAATCACAAGACAAACAGTTGCTGAAAAAGCAAAGATTAGTGAACATGGAAGTTGCTGAGACACAATTTGTGCAGCAGCAACAACATATGGGTTTTTTGTCATGCATGTGGAACTGCGCACTAGTGTTTTTCATTTCTTGCTGCTCCAGAAATCAATAA	3366	0.3821	MALQPSSSSFSYKFTYDVFLSFRGEDTRYAFTGNLDKALCNKGIHTFIDDHQVPRGDQITSALYKAIEESRIFIIVLSHNYASSSFCLSKLAHILNFIKGKGILVLPIFYNVDPSHVRHHRGSFGEALANHEKKFKADKEGFEHNMKKLEEWKKALRDAANLSGYHFKHGDGYEHEFIQKIVELVSSKINRVPLPIADYPVGLESQVLKVKKLLDVRSNGVVHMVGIHGLGGIGKTTLAVAVYNSIADYFEGLCFLENVRETSYKYGLLRLQSNLLSEIVGEKDIRLTNVRQGISIIQHRLQRKKVLLILDDVDKQKQLDAIVGRPNWFGPGSRVIITTRDKQLLACHGVERMYEVEELKKEDALQLLSWKAFKKDKIDPSYEGVLNQAVTYASGLPLALEVIGSNLFRKNTEQWKSALNRYEGIPNKAIQEILKVSYDALEEDQQNVFLDIACCFKECELAKVQDILHAHHDNCMKYHIEVLVDKSLIKINRYGEVTLHDLIEDMGKEIVRKESPNEPGKRSRLWFPEDIADVLEKNKGSSQIEIIFLDFPLSKEGEVEWDGDAFKTMTNLKTLIIRNCVFSKGPKHLPNTLRVLDWWRYPSQDLPCDFHPKKLAICKLPKSFFTSLGLAALFSKKKLLNLTSLNFDWCQYLTQIPDVSCLRHLEKLSFQRCSNLFTIHYSVGLLEKLKILNAVGCDKLKSFPPMKLTSLEQLELSLCASLESFPEILGKMENISQLSLIESPIKELPLSFRNLTRLQKLCLVSYFGTQTICQNAGIFIWIISMMPELAEVAAFHCKGWILPNEDENAEKLSLTVSSNVQRLCLQNCNLSDEFFPKFLPYFANVKKLDLSFNNFRVIPECIEECCFLTRLNLDYCEHLQEIRRIPPNLKYFSANGCVSLTSSCRSMLLNQELHEAGNTIFYLSDGKIPKWFEYQTWGQSISFRFHNKFPAIAICLVVRAFGEDSLPKRHSFSPRVIINGNKHVCGSLSMGMDCTFLFDPREVEFIDNLDEALLENDWNHAEITCEDFNFVPILIKWGIHVLKQQSSVEDIQFTNPCRKRKSDDGLNNSESQDKQLLKKQRLVNMEVAETQFVQQQQHMGFLSCMWNCALVFFISCCSRNQ	1121

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g02998	1121	PRINTS	Disease resistance protein signature	706	722	-	-
	Pumo3g02998	1121	PRINTS	Disease resistance protein signature	224	239	-	-
	Pumo3g02998	1121	PRINTS	Disease resistance protein signature	300	314	-	-
	Pumo3g02998	1121	PRINTS	Disease resistance protein signature	393	407	-	-
	Pumo3g02998	1121	Gene3D	-	358	442	IPR042197	-
	Pumo3g02998	1121	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	165	IPR035897	-
	Pumo3g02998	1121	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	452	IPR027417	-
	Pumo3g02998	1121	SMART	till_3	15	162	IPR000157	GO:0007165
	Pumo3g02998	1121	SUPERFAMILY	L domain-like	514	919	-	-
	Pumo3g02998	1121	Gene3D	Ribonuclease Inhibitor	805	918	IPR032675	-
	Pumo3g02998	1121	Gene3D	-	13	185	IPR035897	-
	Pumo3g02998	1121	ProSiteProfiles	TIR domain profile.	14	189	IPR000157	GO:0007165
	Pumo3g02998	1121	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	891	IPR044974	GO:0006952
	Pumo3g02998	1121	Pfam	TIR domain	16	190	IPR000157	GO:0007165
	Pumo3g02998	1121	Gene3D	Ribonuclease Inhibitor	552	804	IPR032675	-
	Pumo3g02998	1121	Pfam	NB-ARC domain	205	440	IPR002182	GO:0043531
	Pumo3g02998	1121	Gene3D	-	186	351	IPR027417	-
	Pumo3g02998	1121	FunFam	Disease resistance protein (TIR-NBS-LRR class)	12	191	-	-
	Pumo3g02998	1121	SUPERFAMILY	"Winged helix" DNA-binding domain	429	536	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g02998	Pumo-Chr3	54171000	54208379	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g02998	10	763	WRKY Transcription Factor Family	AT4G12020	30.552	1.01e-79	285

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g02998	-		-	gmx:548035	1426.38