Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02992 ATGGCGATGCAAACCGTTTATCTGAAAGAACATGAAGGAATTGTCAACAGTTCTGTTGGACAGTTGTCATCTGTAACTTCAGCTCCATGGTGGAGTGCCTTAGGATCTCAGCCAGTTTATGGGGAGTATTGTGGCCAAATCAAACCCTTTTCATTCGAGATTTCCAACTACGTCGACCAATTTCCAGCCGGTAAGCAAGCGGTACGAGGAGTTGAACAATTGTTGGATAAAGGACCTACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGGTGATGCACCAAATCCTCAGGCAACCTTATCACTGCAGTCATCACTTGCTGAGCCCCACAATCGTTTTGAGATAGGGTTTAATCAGCCTATGATCTGTGCAAAATATCCTTATATGGATCAATTTTATGGACTCTTCTCAGCTTATGGACCTCAAATTTCGGGACGGATAATGCTTCCAATTAACATGACATCTGATGATGGACCAACGTACGTAAATGCTAAGCAGTACCATGGAATCATAAGACGTCGGCAATCACGTGCAAAAGCTGTACTTGAGAAAAAAATGATAAAACGTAGCAAGCCATATATGCATGAATCACGCCATCTACATGCAATGCGGCGACCAAGAGGATGTGGTGGTCGCTTTTTGAACACAAAAAGCTCTACTAATGGAAATGGTAAAAGTGAAAGTGAAGTGAATAAAACTGGCGGCCGACAATTGCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCCTGCAATCTGAGGTTGGAACTTTAAATTTATCAAAGGAGACAAATCGAAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTATTCAAGGGAAGGTTTTGATGCCTTTTCTGTCAATCCTCTTGGATCTTCTGTCCACTCTCTTGCGGACATGATAGGTAGTGGGCATGGTATCATTATGCCCACTAAATGGGTTGCAGCAGTACCAGGTAACTGCTGCAACCTTAAAGTTTGA 993 0.429 MAMQTVYLKEHEGIVNSSVGQLSSVTSAPWWSALGSQPVYGEYCGQIKPFSFEISNYVDQFPAGKQAVRGVEQLLDKGPTTQFTIFPDDCKMSGDAPNPQATLSLQSSLAEPHNRFEIGFNQPMICAKYPYMDQFYGLFSAYGPQISGRIMLPINMTSDDGPTYVNAKQYHGIIRRRQSRAKAVLEKKMIKRSKPYMHESRHLHAMRRPRGCGGRFLNTKSSTNGNGKSESEVNKTGGRQLQSSASQSSEVLQSEVGTLNLSKETNRSSPNISGSEVTSMYSREGFDAFSVNPLGSSVHSLADMIGSGHGIIMPTKWVAAVPGNCCNLKV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02992 330 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Pumo3g02992 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Pumo3g02992 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 95 282 IPR001289 GO:0003700|GO:0006355
Pumo3g02992 330 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Pumo3g02992 330 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Pumo3g02992 330 MobiDBLite consensus disorder prediction 216 277 - -
Pumo3g02992 330 MobiDBLite consensus disorder prediction 199 277 - -
Pumo3g02992 330 Gene3D - 159 221 - -
Pumo3g02992 330 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02992 Pumo-Chr3 53454214 53459742 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02992 1 330 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.103 1.18e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo3g02992 CBFB_NFYA 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02992 K08064 - gmx:100808195 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03276 5 81917882 81922765 Pumo3g02992 3 53454214 53459742 PCT