Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02990 ATGAACAACACAACTGATTCCTCTGGGTTCCTTGGCTCCAACAACATAAGTGGCTTTGGCATGGGGATAGGAATTTCAATTGGGATTCTTCTCCTCATCACAACCATCACACTCACCTCCTACTTCTGCACCAGGTCACAAGTGCCAACTCATCCAAGGAGAAGAACAAGTTCCAACAACCCACAATTCCTCGAGCCACAGCACACAATAGTTGATGTTGGCCTAGATGAAGCCACAATCATGAACTACCCCAAGATGCTCTACTCTGAGGCCAAGCTAAGGAAATCTGATTCCACAGCAACAAGCTGCTCCATATGCCTTGGAGATTACAAAAGTTCTGATTTGCTAAGGGTGTTGCCTGATTGTGACCATGTCTTCCACCTCAAGTGCATAGACCCTTGGTTGAGGCTGCATCCAACTTGCCCTCTCTGCAGAACATCACCAATTCCAACACCTCTCTCTACACCTCTGGCTGAAGTGGTCCCCTTAGCAACCAGGAGAGACTAA 507 0.4753 MNNTTDSSGFLGSNNISGFGMGIGISIGILLLITTITLTSYFCTRSQVPTHPRRRTSSNNPQFLEPQHTIVDVGLDEATIMNYPKMLYSEAKLRKSDSTATSCSICLGDYKSSDLLRVLPDCDHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02990 168 CDD RING-H2_EL5-like 102 145 - -
Pumo3g02990 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 149 IPR013083 -
Pumo3g02990 168 Pfam Ring finger domain 102 145 IPR001841 -
Pumo3g02990 168 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Pumo3g02990 168 SMART ring_2 103 144 IPR001841 -
Pumo3g02990 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 159 IPR045899 -
Pumo3g02990 168 SUPERFAMILY RING/U-box 79 150 - -
Pumo3g02990 168 FunFam E3 ubiquitin-protein ligase ATL6 64 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02990 Pumo-Chr3 53430971 53431616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02990 6 165 C3H Transcription Factor Family AT2G35910 61.728 1.47e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02990 - - gmx:121172638 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03277 5 81947350 81948220 Pumo3g02990 3 53430971 53431616 PCT