Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02989 ATGGATTCAAAAAATGTGCCAAACTTGAACGGTGTCATTAAGAAGACCAAAGGCCGTCAAAAGATCGAGATGAAGAAGATGAGCAACGAGCGTAACCTTCGGGTGACGTTCTCGAAGCGCCGTACCGGGATTTTCAAGAAAGCGAGTGAGCTTACCACCCTTTGTGGCGTGGATCTTGCTATCATTATGTTTTCACCTGGTAATCGGGTTTTCTCCTTCGGCAGTCCTAATGTGGATTCTGTTATCCAGCGCTATACGGCGCAGGGCCCACCTCCCCTCCTCAACCTGGACTTGAATGAGGCCCACTTAGACGAGTGTGAGCTCCTCGTTCACCTTAACAACTTTTCCAACCAAATTGATGAGGAGAAGAAGCGTGCAAAGGATTTGAACTGTATGTTGAATGCTGCAGAGGAACACTCCTAG 423 0.4799 MDSKNVPNLNGVIKKTKGRQKIEMKKMSNERNLRVTFSKRRTGIFKKASELTTLCGVDLAIIMFSPGNRVFSFGSPNVDSVIQRYTAQGPPPLLNLDLNEAHLDECELLVHLNNFSNQIDEEKKRAKDLNCMLNAAEEHS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02989 140 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pumo3g02989 140 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Pumo3g02989 140 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pumo3g02989 140 Coils Coil 112 139 - -
Pumo3g02989 140 Gene3D - 29 92 IPR036879 GO:0003677|GO:0046983
Pumo3g02989 140 CDD MADS_MEF2_like 18 85 IPR033896 GO:0000977|GO:0045944
Pumo3g02989 140 PANTHER MADS BOX PROTEIN 19 127 - -
Pumo3g02989 140 FunFam Agamous-like MADS-box protein AGL62 29 94 - -
Pumo3g02989 140 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pumo3g02989 140 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo3g02989 140 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pumo3g02989 140 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02989 Pumo-Chr3 53425565 53425987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02989 12 129 Type I MADS-box Gene Family AT5G60440 55.285 1.17e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo3g02989 SRF-TF 1.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02989 - - gmx:100808929 208.764