Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02988 ATGGATTCAAAAAATGTGCCAAGCTTGAATGATAACGTTAAGAAGACCAAAGGTCGGCAAAAGATTGAGATGAAGAAGATAAGCAATGAGCGTAACCTTCAGGTGACATTCTCGAAGCGTCGCACAGGGATTTTCAAGAAAGCAAGCGAGCTTGCCACTCTTTGCGACGTGGACGTTGCTGTGATTGTGTTCTCACCCGGTAACCGAGTTTTCTCCTTCGGCAACCCCAACGTGGATTCTGTTATCCAACGCTATATGACCCAGGCCCCACCTTCCAGCCTCACCCAAGACCTTAATGAGGCCTACTGCACCATGGACGAGCGTGAGCTCCACGCGCACCTCAACTACCTAGACAACCAGTTCGTTATGGAGAAGAAGCGCATGGAGGATTTGAATCATTTGCTGAAGGTCACAGAGGATCACTTTTGGTGGACCACACCAATTGAAAGCATGAACAAGGCCCAACTCGAGAAGTATAAGAAGGCACTGGAGGAGTTGAAGACATGTGTCGGTGAAAATCGTAAGAAGCTTCTGTTTGGGAGTGTTCTTACTTATAACTCATCAACTCAATTTTTTGCAGGTGGAAGCTCTTCTTCCAATGTTAATAACACTATGACTATGCGTCCGCCACCATTGATGCAAAATCATGTGGGTGTGATTGATGGGAGCATCTTGCGCCACCATCAATTTAACAACATTCATGGTCATGAACATGGAGATGGACCTACTCTTGGGTTCTTTTGA 744 0.461 MDSKNVPSLNDNVKKTKGRQKIEMKKISNERNLQVTFSKRRTGIFKKASELATLCDVDVAVIVFSPGNRVFSFGNPNVDSVIQRYMTQAPPSSLTQDLNEAYCTMDERELHAHLNYLDNQFVMEKKRMEDLNHLLKVTEDHFWWTTPIESMNKAQLEKYKKALEELKTCVGENRKKLLFGSVLTYNSSTQFFAGGSSSSNVNNTMTMRPPPLMQNHVGVIDGSILRHHQFNNIHGHEHGDGPTLGFF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02988 247 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Pumo3g02988 247 SUPERFAMILY SRF-like 18 92 IPR036879 GO:0003677|GO:0046983
Pumo3g02988 247 Gene3D - 29 99 IPR036879 GO:0003677|GO:0046983
Pumo3g02988 247 PANTHER MADS BOX PROTEIN 19 172 - -
Pumo3g02988 247 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pumo3g02988 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pumo3g02988 247 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pumo3g02988 247 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo3g02988 247 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pumo3g02988 247 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pumo3g02988 247 FunFam Agamous-like MADS-box protein AGL62 29 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02988 Pumo-Chr3 53403835 53404578 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02988 13 199 Type I MADS-box Gene Family AT5G60440 44.503 1.06e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo3g02988 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02988 - - ccaj:109815930 295.434