Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02979 ATGGGAAACAACTGTGTTGGATCGAGAACCTGTTCGAAAGATGGAACGGATGGCTCTTCTTATTCAAGTTCATTCTGGTGGTCACGCGGACACAAGAAAGATTCTTCTCATGCACACAAAGGTGGCAAAAAGAGCAAAAAAGCCACAGAAACTGTTCAAAACAATCCCCCACAGATAGTGAAAATTGACAGGGAGGATGTGAAGCCTCCTCATCAAACCAAAGAGACTAAACCAGCTTCAGAACCAACAAGGGAGCAGCCAGCAAAACCAAAGAAGCCACACAATGTGAAGAGGCTAGCAAGTGCAGGCCTCAAAACAGATTCTGTTTTGCAAAGGAAAACCGGTAACCTTAAGGAGTTTTACAATTTGGGACAAAAGCTTGGACAAGGCCAGTTTGGAACCACTTTCCTTTGTGTGGAGAAGGCCACTGGGAAAGAGTATGCATGCAAGTCAATACTGAAGAGGAAGCTTTTGACAGATGAGGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCACCACTTGGCAGGGAGTCCTAATGTGATCTCAATCAAGGAGGCTTTTGAGGATGCTGTTGCAGTTCATGTTGTTATGGAGCTGTGTGCAGGGGGTGAGTTGTTTGATAGGATTGTGGAAAGAGGGCATTACACTGAAAGAAAGGCAGCCAAAGCTTGCAAGGACTATAGTTGGTGTGATTGA 702 0.4516 MGNNCVGSRTCSKDGTDGSSYSSSFWWSRGHKKDSSHAHKGGKKSKKATETVQNNPPQIVKIDREDVKPPHQTKETKPASEPTREQPAKPKKPHNVKRLASAGLKTDSVLQRKTGNLKEFYNLGQKLGQGQFGTTFLCVEKATGKEYACKSILKRKLLTDEDVEDVRREIQIMHHLAGSPNVISIKEAFEDAVAVHVVMELCAGGELFDRIVERGHYTERKAAKACKDYSWCD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02979 233 ProSiteProfiles Protein kinase domain profile. 121 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02979 233 MobiDBLite consensus disorder prediction 61 92 - -
Pumo3g02979 233 PANTHER SERINE/THREONINE-PROTEIN KINASE 108 227 - -
Pumo3g02979 233 MobiDBLite consensus disorder prediction 1 29 - -
Pumo3g02979 233 SMART serkin_6 121 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02979 233 MobiDBLite consensus disorder prediction 1 102 - -
Pumo3g02979 233 Gene3D Phosphorylase Kinase; domain 1 125 201 - -
Pumo3g02979 233 Pfam Protein kinase domain 121 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02979 233 Gene3D Transferase(Phosphotransferase) domain 1 163 227 - -
Pumo3g02979 233 SUPERFAMILY Protein kinase-like (PK-like) 120 226 IPR011009 -
Pumo3g02979 233 ProSitePatterns Protein kinases ATP-binding region signature. 127 154 IPR017441 GO:0005524
Pumo3g02979 233 FunFam Calcium-dependent protein kinase 1 123 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02979 Pumo-Chr3 53241454 53242155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02979 1 227 EF-hand Containing Proteins AT3G10660 49.660 4.05e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo3g02979 Pkinase 1.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02979 K13412 - gmx:100783079 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02979 3 53241454 53242155 Pumo5g03287 5 82078831 82083654 PCT