Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02978 ATGCATAGGGATCTTAAGCCTGAGAATTTTCTCTTTGTTAATCAGCAAGAAGAATCCCCTCTTAAGGCAATAGATTTTGGACTGTCTGCTTTTTTCAAACCAGGTGAAATTTTCTATGATGTAGTAGGAAGTCCTTATTATGTAGCACCTGAAGTTCTACGTAAGCGTTATGGCCCCGAAGCAGATGTATGGAGTGCTGGTGTCATAATATACATTCTCTTAAGTGGGGTGCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGCGATTTTGAATTATGAACTTGATTTCTCATCGGATCCTTGGCCTGCTATATCTGCAAGTGCAAAAGACTTGGTTAGGAAGATGCTTGTCAGAGATCCTAGTAAACGGATATCAGCTTATGAAGTTCTTCGTCACCCCTGGATTCAAGTTGATGGAGCAGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAGTTTTATGCAATGAACAAACTCAAGAAAATGGCTCTCAGAGTTATTGCACAGAATCTCTCTGAAGAAGAAATTGCAGGGTTGAAAGAAATGTTTAAGATGATAGACACAGACAATAGTGGTCAAATTACATTTGAAGAACTCAAGGTTGGACTGAAAAAGTTTGGTGCTAATCTCAATGAATCTGAAATTTACGACCTTATGCAAGCAGCAGATGTTGATAACAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATCTAAACAAGGTTGACAGGGAAGATCATTTAGTTGCGGCTTTCGCTTATTTTGATAAAGATGGAAGTGGCTACATCACTCAAGATGAGCTTCAACAAGCTTGTGAAGAATTTGGCATTGGGGATGTTCGCTTGGAGGAAATGATCCGAGAAGCTGATCAAGATAATGATGGAAGAATAGACTACAATGAATTTGTGGCCATGATGCAGAAAGGCAATGCAGATTTGGGTAAGAGGGGTCGAAAGGGTAGCACTAGTTTTAGAGTTGGATTTAGGGAAGCACTACCTGTATGTTAA 1038 0.4046 MHRDLKPENFLFVNQQEESPLKAIDFGLSAFFKPGEIFYDVVGSPYYVAPEVLRKRYGPEADVWSAGVIIYILLSGVPPFWGESEQEIFEAILNYELDFSSDPWPAISASAKDLVRKMLVRDPSKRISAYEVLRHPWIQVDGAAPDKPLDSAVLSRLKQFYAMNKLKKMALRVIAQNLSEEEIAGLKEMFKMIDTDNSGQITFEELKVGLKKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVDREDHLVAAFAYFDKDGSGYITQDELQQACEEFGIGDVRLEEMIREADQDNDGRIDYNEFVAMMQKGNADLGKRGRKGSTSFRVGFREALPVC 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02978 345 Pfam EF-hand domain pair 198 248 IPR002048 GO:0005509
Pumo3g02978 345 CDD EFh 186 245 IPR002048 GO:0005509
Pumo3g02978 345 ProSitePatterns EF-hand calcium-binding domain. 266 278 IPR018247 -
Pumo3g02978 345 Pfam EF-hand domain pair 257 317 IPR002048 GO:0005509
Pumo3g02978 345 FunFam Calcium-dependent protein kinase SK5 48 143 - -
Pumo3g02978 345 ProSiteProfiles Protein kinase domain profile. 1 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02978 345 ProSiteProfiles EF-hand calcium-binding domain profile. 291 322 IPR002048 GO:0005509
Pumo3g02978 345 Gene3D - 145 322 - -
Pumo3g02978 345 Gene3D Transferase(Phosphotransferase) domain 1 1 141 - -
Pumo3g02978 345 ProSiteProfiles EF-hand calcium-binding domain profile. 181 216 IPR002048 GO:0005509
Pumo3g02978 345 ProSiteProfiles EF-hand calcium-binding domain profile. 217 252 IPR002048 GO:0005509
Pumo3g02978 345 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 312 - -
Pumo3g02978 345 SMART serkin_6 1 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02978 345 SUPERFAMILY EF-hand 177 318 IPR011992 -
Pumo3g02978 345 ProSitePatterns EF-hand calcium-binding domain. 194 206 IPR018247 -
Pumo3g02978 345 CDD EFh 257 317 IPR002048 GO:0005509
Pumo3g02978 345 ProSiteProfiles EF-hand calcium-binding domain profile. 253 288 IPR002048 GO:0005509
Pumo3g02978 345 SMART efh_1 257 285 IPR002048 GO:0005509
Pumo3g02978 345 SMART efh_1 221 249 IPR002048 GO:0005509
Pumo3g02978 345 SMART efh_1 185 213 IPR002048 GO:0005509
Pumo3g02978 345 SMART efh_1 291 319 IPR002048 GO:0005509
Pumo3g02978 345 SUPERFAMILY Protein kinase-like (PK-like) 1 161 IPR011009 -
Pumo3g02978 345 Pfam Protein kinase domain 1 138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02978 345 ProSitePatterns EF-hand calcium-binding domain. 230 242 IPR018247 -
Pumo3g02978 345 ProSitePatterns EF-hand calcium-binding domain. 300 312 IPR018247 -
Pumo3g02978 345 FunFam Calcium-dependent protein kinase 1 146 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02978 Pumo-Chr3 53237405 53241431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02978 1 339 EF-hand Containing Proteins AT5G04870 78.466 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo3g02978 Pkinase 6.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02978 K13412 - gmx:100800415 667.151