Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02973 ATGGAGGTTCCAGGAATGGAAGGCAAGACCGAAAGTCATATGACATCGGCAGCAGCCTTTGTGGAAGGGGGGATTCAAGAAGCTTGTGATGATGCTTGCAGCATATGCCTTGAGGACTTTTGCAAAAGTGATCCTGCCACTGTCACTAATTGCAAGCATGATTTCCACCTGCAGTGCATTCTTGAATGGTGTCAACGAAGCTCTCAATGCCCTATGTGTTGGCAACCTATCAGCTTGAAGGATGCTACCAGTCAAGAACTGCTTGAGGCAGTAGAGCTGGAGAGGAGCTTGAGGGATACTCCATCAAGAAATGCTGCGATTTTTCATCATCCGACACTTGGTGATTTTGAATTGCAGCATTTACCAATGGGTGTGAATGAGGCTGATATTGAACAGCGAATAATTCAACATTTAACTGCTGCAGCAGCAATGAGGAGATCACACCACCTCGGCCGGAGGGAAGGCCATCGAACTAGGTCATCTGCTCATGGCCGTCCACACTTTGTAGTATACTCAACTCAGCCTAGTGCACCTCCATCAGCTGCTGGAGGGGGAAGTGAACCAGCTGCAATACCTGTAGGAAGTCCATCTACCCCACTTACATTTGATGGAACTGAGCAATCATCACCACAGCAGATCTCCCAATTTCAAACTCGGAGTTCTTCTTTACCTCCCAGCTCTACTGTTGCAGCAACAAATTTTCAAGGAGTTCACTCTAATGATAGAAGCTTTGCCTCTCATTCTTTGCCTGCAAGCCAAGATAGAGCACAGCCATCAGAACAATCGTTCTCCAATTCTCTGCGTTCCAGATTTAATGCAGTATCCATGAGATACAGAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCCTCTATGTCAGAACTTGGTTCAGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGCGTGTCCCGATTGATGGAGCGGCTTGAAACAACAAGAGAAAATAATAGGGCTGCAGGCACCTCTTTATCAAGTCATTTGGTGAATTGTTCCATCGCAGAGACAAGCAACCAAAACAATGTGGAAGCTCGTGGAGAGAACTCTTTGCGTGACAATAATAATCCAGCTACTTTTTCTGCTAGCTCAGATTCGAAATGA 1146 0.4572 MEVPGMEGKTESHMTSAAAFVEGGIQEACDDACSICLEDFCKSDPATVTNCKHDFHLQCILEWCQRSSQCPMCWQPISLKDATSQELLEAVELERSLRDTPSRNAAIFHHPTLGDFELQHLPMGVNEADIEQRIIQHLTAAAAMRRSHHLGRREGHRTRSSAHGRPHFVVYSTQPSAPPSAAGGGSEPAAIPVGSPSTPLTFDGTEQSSPQQISQFQTRSSSLPPSSTVAATNFQGVHSNDRSFASHSLPASQDRAQPSEQSFSNSLRSRFNAVSMRYRESISKGTRGWKERLFSPNSSMSELGSEVRRELNAKIASVSRLMERLETTRENNRAAGTSLSSHLVNCSIAETSNQNNVEARGENSLRDNNNPATFSASSDSK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02973 381 MobiDBLite consensus disorder prediction 198 266 - -
Pumo3g02973 381 Pfam Ring finger domain 32 73 IPR001841 -
Pumo3g02973 381 SUPERFAMILY RING/U-box 25 80 - -
Pumo3g02973 381 Coils Coil 308 328 - -
Pumo3g02973 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 90 IPR013083 -
Pumo3g02973 381 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 81 - -
Pumo3g02973 381 MobiDBLite consensus disorder prediction 149 163 - -
Pumo3g02973 381 MobiDBLite consensus disorder prediction 353 381 - -
Pumo3g02973 381 SMART ring_2 33 73 IPR001841 -
Pumo3g02973 381 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Pumo3g02973 381 MobiDBLite consensus disorder prediction 145 266 - -
Pumo3g02973 381 FunFam E3 ubiquitin-protein ligase RHF2A 5 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02973 Pumo-Chr3 53186667 53191024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02973 30 81 C3H Transcription Factor Family AT4G00335 44.231 9.51e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02973 K19043 - gmx:100802025 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02973 3 53186667 53191024 Pumo3g02973 3 53186667 53191024 ECH
Pumo5g03291 5 82109102 82111508 Pumo3g02973 3 53186667 53191024 PCT