Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02971 ATGGATTCAAAAAATGTGCCAAACTTGAATGGCGTCACTAAGAAGACCAAAGGTCGACAAAAGATTGAGATGAAGAAGATGAGCAATGAGAGTAACCTTCGAGTGACGTTCTCGAAGCGTCGCACTGGGGTTTTTAAGAAAGTGAGTGAGCTTGTAACCCTTTGCGGCAGTGGACGTCGCTGTGATTATGTTCTCACCTACCCTAGTGTGGATTCCGTAATCCAACGCTATACGACACAGGGCCCACCTCCCCTCCTTAGCCTGGACCTCAACGAAGCCCACTCCACCATGGATGAAGGTGAGCTCCACGCACACCTCAGCTGCTTGTCCAACCAAATCGCTGGTGAGAAGAAACGCATAGAAGATTTAAACCATTTGTTGAAGGCTGTGGAGGATCAATTCTGGTGGGCTTCCCCTATTGAAAGCATGAACGATGCCCAACTTGACAAGTACAAGAAGATGTCAAAGGAGTTAAAGAGACATCTCAAAGAAAAACTTTAG 501 0.4671 MDSKNVPNLNGVTKKTKGRQKIEMKKMSNESNLRVTFSKRRTGVFKKVSELVTLCGSGRRCDYVLTYPSVDSVIQRYTTQGPPPLLSLDLNEAHSTMDEGELHAHLSCLSNQIAGEKKRIEDLNHLLKAVEDQFWWASPIESMNDAQLDKYKKMSKELKRHLKEKL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02971 166 Coils Coil 106 133 - -
Pumo3g02971 166 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pumo3g02971 166 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo3g02971 166 PANTHER MADS BOX PROTEIN 19 162 - -
Pumo3g02971 166 Coils Coil 144 166 - -
Pumo3g02971 166 SUPERFAMILY SRF-like 17 81 IPR036879 GO:0003677|GO:0046983
Pumo3g02971 166 SMART madsneu2 17 79 IPR002100 GO:0003677|GO:0046983
Pumo3g02971 166 Gene3D - 29 83 IPR036879 GO:0003677|GO:0046983
Pumo3g02971 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 57 IPR002100 GO:0003677|GO:0046983
Pumo3g02971 166 ProSiteProfiles MADS-box domain profile. 17 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02971 Pumo-Chr3 53156885 53157410 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02971 12 160 Type I MADS-box Gene Family AT5G60440 41.463 1.05e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo3g02971 SRF-TF 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02971 - - gmx:102661396 247.284