Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02970 ATGGATTCAAAAAACATGCCAAACATGAACGGCGTCACTAAGAAGACCCAAGGTCGGAAAAAGATTGAGATTAAGAAGATGAGCAATGAGAGTAACCTTCGGGTGACGTTCTCGAAGCGTCGCACTGGGGTTTTCAACAAAGCGAGCGAGCTTGCAACCCTCTGCGGCGTGGATGTCGCTGTGATTATGTTCTCACCTAGTAATAGAGTTTTCTCCTTTGGCAGCCCCAGTGTGGATTCCGTTATCCAACGCTATACGACACAGGGTCCACCTCCCCTCCTCACCATGGACCTTAACGAGGCCGCCTCCACCGTGGACGAAGGTGAGCTCAACGCGCACCTCAACTGCTTGTCCAACCAAATTGTCATGGAGAAGAAGCGTGTAGAGGATTTAAACCATTTGTTGAAGGCCGCAGAGGATCAATTTTGGTGGGCTTTGCCTATTGAAAGCATGAACGATGCCCAACTTGACAAGTATAAGAAGATGTCGGAGGAGTTAAAGAGTTATCTTAAAGAAAAATCAACCCAAAAACTTGCACTCAGAACAAAAGACTACAGGATTTGGAATAAGGTTTCAGAGCGGGGTTTGGAGCCAACGCCGGAGGCGTCGAAGGGGGCTTTGGACATGGCATCAGAGTGGGGTTTGGACGCAGTGTCGGAGTGCAATTTGGAATCAATGTTGGAGAAAGGTTTGGAGGCAGTGACACTTTAG 711 0.4838 MDSKNMPNMNGVTKKTQGRKKIEIKKMSNESNLRVTFSKRRTGVFNKASELATLCGVDVAVIMFSPSNRVFSFGSPSVDSVIQRYTTQGPPPLLTMDLNEAASTVDEGELNAHLNCLSNQIVMEKKRVEDLNHLLKAAEDQFWWALPIESMNDAQLDKYKKMSEELKSYLKEKSTQKLALRTKDYRIWNKVSERGLEPTPEASKGALDMASEWGLDAVSECNLESMLEKGLEAVTL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02970 236 Coils Coil 121 141 - -
Pumo3g02970 236 PANTHER MADS BOX PROTEIN 19 171 - -
Pumo3g02970 236 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pumo3g02970 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pumo3g02970 236 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pumo3g02970 236 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pumo3g02970 236 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pumo3g02970 236 Gene3D - 95 207 - -
Pumo3g02970 236 CDD MADS_MEF2_like 18 85 IPR033896 GO:0000977|GO:0045944
Pumo3g02970 236 Gene3D - 29 91 IPR036879 GO:0003677|GO:0046983
Pumo3g02970 236 Coils Coil 152 172 - -
Pumo3g02970 236 FunFam Agamous-like MADS-box protein AGL62 29 93 - -
Pumo3g02970 236 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Pumo3g02970 236 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02970 Pumo-Chr3 53150610 53153407 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02970 12 187 Type I MADS-box Gene Family AT5G60440 41.758 9.54e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo3g02970 SRF-TF 2.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02970 - - gmx:100803607 285.804