Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02955 ATGGGCAACAACTGCGTGGGACCCAATGTAGGCAACGGCTTCCTCCAATCCGTCACGGCGGCGGTGTGGAAGACGCGCCCGCCGGAGCCCCGCCTCCCGCCGCCCAACGCCGATGCCAAAGCCACCGGAGCCCCGCCTTCCACCACAACAAACACCAACACCGATTCCTCGAAAGCTTCGGAAACTTCTCGAAGCTCCGATCCCCCGATGCCGGTCCAGAGCACACCGCCGGAACAGGTCAAAATGCCCGCGGCGGAAGCCGCGAGGCCGCTCCCGCTGGAGCCCGAGAAGCCGGCCTCGAGCCACCACGCCGAGCCGGACAGGGCCAAGAAGCCGACTCACGTGAAAAGAGTATCCAGTGTGGGACTTCAAGTGGACTCCGTCTTGGGCCGGAAAACCGAAAACATGAAAGAGTTCTTTAGCTTGGGGCGCAAGTTAGGGCAGGGGCAATTCGGGACAACGTTCCTCTGCGTCCAGAAGGGGACCAACAAGGATTTCGCATGCAAGTCCATCGCGAAGCGCAAGCTGACGACGCAGGAGGATGTTGAGGATGTAAGAAGGGAGATTCAGATCATGCACCACTTGGCGGGGCACCCCAACGTGATACAGATTGTGGGGGCCTATGAGGACGCTGTTGCGGTGCACGTTGTGATGGAGCTCTGTGCTGGAGGGGAGTTGTTTGATAGGATCATACAGAGGGGGCATTACACTGAGAGGAAGGCTGCTGAGCTTGCTAGGTTGATTGTTAGTGTTGTGGAGGCTTGTCATTCCTTAGGGGTCATGCATAGGGATTTGAAGCCGGAGAATTTCTTGTTCATTAATCATGAGGAAGAGTCGCCACTCAAGACGATTGATTTTGGACTCTCTGTGTTCTTTAGACCAGGTGAAACATTCACTGATGTGGTTGGGAGCCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGCACTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATCTATATTTTACTCAGTGGAGTTCCCCCATTTTGGGATGAAACGGAACAGGGAATATTTGAGCAAGTTTTGAAAGGAGAGCTTGACTTCATTTCCGAACCCTGGCCTAGCATATCTGAAAGCGCAAAGGATCTTGTTAGAAGGATGCTTGTAAGGGACCCCAAGAAACGGATGACAGCACATGAAGTTCTTTGCCACCCATGGGTTCAGATTGGAGGTGTGGCTCCTGATAAACCGCTTGATTCTGCTGTCTTGTCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTCAAAAAAATAGCCATTCGAGTAATTGCTGAAAACCTGTCTGAGGAAGAAATTGCAGGACTGAAAGAAATGTTCAAGATGATAGACACGGATAACAGTGGACAGATCACTCTTGAGGAACTGAAAAACGGTTTGGAGAGAGTGGGTTCCGTTCTTAAGGATTCTGAAATTACTTGGTTAATGGAAGCAGCAGACGTGGATAACAGTGGTACCATAGACTATGGTGAATTCTTAGCAGCTATGCTTCACCTAAACAAGATCCAGAAGGAGGATCATCTATATGCAGCATTCACATACTTTGACAAAGATGGAAGTGGATACATAACAAAAGATGAGCTCCAACAAGCGTGCGAACAGTTCGGCCTAAAGGATTATCATCTAGATGACATAATACGTGAAATCGACCGAGATAATGATGGACGCATTGATTACAGCGAGTTTGCTGCAATGATGCAAGACACTGGTTTTGGCAAAAAGGGGTTTTAA 1761 0.5026 MGNNCVGPNVGNGFLQSVTAAVWKTRPPEPRLPPPNADAKATGAPPSTTTNTNTDSSKASETSRSSDPPMPVQSTPPEQVKMPAAEAARPLPLEPEKPASSHHAEPDRAKKPTHVKRVSSVGLQVDSVLGRKTENMKEFFSLGRKLGQGQFGTTFLCVQKGTNKDFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQIVGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFINHEEESPLKTIDFGLSVFFRPGETFTDVVGSPYYVAPEVLRKHYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFISEPWPSISESAKDLVRRMLVRDPKKRMTAHEVLCHPWVQIGGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEITWLMEAADVDNSGTIDYGEFLAAMLHLNKIQKEDHLYAAFTYFDKDGSGYITKDELQQACEQFGLKDYHLDDIIREIDRDNDGRIDYSEFAAMMQDTGFGKKGF 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02955 586 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Pumo3g02955 586 MobiDBLite consensus disorder prediction 42 69 - -
Pumo3g02955 586 Gene3D - 405 579 - -
Pumo3g02955 586 SUPERFAMILY Protein kinase-like (PK-like) 140 399 IPR011009 -
Pumo3g02955 586 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Pumo3g02955 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Pumo3g02955 586 ProSiteProfiles EF-hand calcium-binding domain profile. 551 582 IPR002048 GO:0005509
Pumo3g02955 586 MobiDBLite consensus disorder prediction 92 118 - -
Pumo3g02955 586 PANTHER SERINE/THREONINE-PROTEIN KINASE 132 572 - -
Pumo3g02955 586 MobiDBLite consensus disorder prediction 21 80 - -
Pumo3g02955 586 MobiDBLite consensus disorder prediction 96 114 - -
Pumo3g02955 586 Gene3D Transferase(Phosphotransferase) domain 1 226 401 - -
Pumo3g02955 586 CDD STKc_CAMK 139 397 - -
Pumo3g02955 586 ProSiteProfiles EF-hand calcium-binding domain profile. 513 548 IPR002048 GO:0005509
Pumo3g02955 586 ProSitePatterns EF-hand calcium-binding domain. 526 538 IPR018247 -
Pumo3g02955 586 Pfam Protein kinase domain 141 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02955 586 SUPERFAMILY EF-hand 437 577 IPR011992 -
Pumo3g02955 586 ProSitePatterns Protein kinases ATP-binding region signature. 146 173 IPR017441 GO:0005524
Pumo3g02955 586 Pfam EF-hand domain pair 446 506 IPR002048 GO:0005509
Pumo3g02955 586 Pfam EF-hand domain pair 516 577 IPR002048 GO:0005509
Pumo3g02955 586 SMART efh_1 481 509 IPR002048 GO:0005509
Pumo3g02955 586 SMART efh_1 517 545 IPR002048 GO:0005509
Pumo3g02955 586 SMART efh_1 551 579 IPR002048 GO:0005509
Pumo3g02955 586 SMART efh_1 445 473 IPR002048 GO:0005509
Pumo3g02955 586 FunFam Calcium-dependent protein kinase SK5 226 410 - -
Pumo3g02955 586 ProSitePatterns EF-hand calcium-binding domain. 560 572 IPR018247 -
Pumo3g02955 586 Gene3D Phosphorylase Kinase; domain 1 142 225 - -
Pumo3g02955 586 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Pumo3g02955 586 FunFam Calcium-dependent protein kinase 1 142 225 - -
Pumo3g02955 586 SMART serkin_6 140 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02955 586 FunFam Calcium-dependent protein kinase 1 406 580 - -
Pumo3g02955 586 ProSiteProfiles Protein kinase domain profile. 140 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02955 586 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02955 Pumo-Chr3 52772119 52777782 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02955 1 586 EF-hand Containing Proteins AT2G38910 74.873 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pumo3g02955 Pkinase 5.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02955 K13412 - gmx:100813232 1048.11