Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02954 ATGGCCGAGCCACAAGGTGGTGGTAGTAATGGTAGTGGTGGTGACAGTGGCAGTGGCGCTTCTGGAAGCAGGCGTAGAGGTACTGCTTCCAGACGTGCCATGGCATCACAAACACAAGATGAAGCAATGGTGGGGTCTTCACCCACAACACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAGGTGCATTGGGGGGTGCATCTTTGCACCCCACTTTGGTACTGACCAGGGTGCAGCCAAGTTTGCAGCTGTGCACAAGGTGTTTGGGGCTAGCAATGTGTCAAAGCTCTTGTCCAACATTCCGGCGAACCGCCGCCATGAAGCGGCGACAACCATATCATATGAGGCTCAAGCAAGGTTGTCTGATCCGGTTTATGGCTGTGTCTCCACCATCCTTGCTCTGCAACAACAGGTGGCATCTTTGCAAGCAGAGCTAGCAATGTTGCAAAATCAGCTGATGAATAGTAGGTTTGCCTATGCAAGTGCACTTCAGACCACACAGCTACAACAACCAAATATGAATACAACAACACTACAACCAGCATATTCCAACAATTCATGTGCTTCCACCAACCTTCTGAACTTGAGCAGCTTCAACAATAACCCTGGCTTTGACCTTGCAATGGACACAGCACCCTCATCAAGTCTGGAGCCTCTTCAACTCACAAGGTTGTCCCAATGTGAGGAAGAGGATGAAGAAGAAAGCAAGACTCAGCAAGCCTTCAACCACCATTAA 735 0.4993 MAEPQGGGSNGSGGDSGSGASGSRRRGTASRRAMASQTQDEAMVGSSPTTPCGACKFLRRRCIGGCIFAPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIPANRRHEAATTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAMLQNQLMNSRFAYASALQTTQLQQPNMNTTTLQPAYSNNSCASTNLLNLSSFNNNPGFDLAMDTAPSSSLEPLQLTRLSQCEEEDEEESKTQQAFNHH 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02954 244 Coils Coil 131 151 - -
Pumo3g02954 244 ProSiteProfiles LOB domain profile. 50 152 IPR004883 -
Pumo3g02954 244 Pfam Lateral organ boundaries (LOB) domain 51 149 IPR004883 -
Pumo3g02954 244 PANTHER LOB DOMAIN CONTAINING PROTEIN 49 235 - -
Pumo3g02954 244 MobiDBLite consensus disorder prediction 9 46 - -
Pumo3g02954 244 MobiDBLite consensus disorder prediction 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02954 Pumo-Chr3 52764248 52768031 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02954 50 235 AS2 family AT3G03760 61.421 1.02e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo3g02954 LOB 1.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02954 - - gmx:100808548 387.882